OMG Exon Capture Raw 102.100.100/56255 HTL5KDRXX TAATCAT

Isoodon obesulus, 6568006 Australia Australian Capital Territory

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type illumina-exoncapture
access_rights unknown
ala_species_name
ala_specimen_url NA
ancillary_notes Collector sample ID = microchip number | Sample exhausted
archive_ingestion_date 2020-09-17
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-957/A00548_0115_AMacDonald_52633_Marsupial_gDNA/
birth_date unknown
bpa_dataset_id 102.100.100/52633
bpa_library_id 102.100.100/56255
bpa_sample_id 102.100.100/360769
bpa_work_order 40069
class Mammalia
collection_date 2018-05-16
collection_method unknown
collector unknown
collector_sample_id 6568006.0
common_name Southern brown bandicoot
contextual_data_submission_date
coord_uncertainty_metres unknown
country Australia
custodian unknown
data_custodian Steve Cooper | Kym Ottewell | Anna MacDonald
data_generated 2020-09-17
data_type Illumina FASTQ
dataset_url (ingested)
date_of_transfer 2020-09-17
ddrad_data no
ddrad_dataset_ids NA
death_date unknown
description Novaseq 6000 Marsupial gDNA capture 52629, 52630, 52633
dna_conc_ng_ul 7.75
dna_extracted_by Anna MacDonald
dna_extraction_date 2018-11-26
dna_extraction_method salting out
dna_treatment 16 biorupter cycles
exon_capture_data yes
exon_capture_dataset_ids 52633.0
experimental_design Nimblegen Exon Capture, marsupial probes V2, dual indexed
facility brf
facility_sample_id 56255_HTL5KDRXX_TAATCAT
family Peramelidae
file
flowcell_id HTL5KDRXX
folder_name A00548_115_AMacDonald_52629_52630_52633_Marsupial_gDNA
genome_data no
genome_dataset_ids NA
genus Isoodon
habitat unknown
identified_by unknown
institution_name Tidbinbilla Nature Reserve
latitude
library_comments library ng/┬ÁL for 200-1000 bp range
library_location ANU EBL
library_ng_ul 66.0972780931
library_pcr_cycles 12.0
library_pcr_reps 2.0
library_prep_date 2020-08-31
library_prep_method Meyer and Kircher protocol
library_prepared_by Anna MacDonald | Liz Broady
library_status Submitted for sequencing
library_type exon capture
life_stage not determined
location_generalisation
location_text Wallaroos enclosure, Tidbinbilla Nature Reserve
longitude
n_libraries_pooled 288
omg_project Conservation
order Peramelemorphia
p5_library_index_id 19.0
p5_library_index_sequence GAATCTC
p5_library_oligo_sequence AATGATACGGCGACCACCGAGATCTACACgagattcACACTCTTTCCCTACACGACGCTCTT
p7_library_index_id 68.0
p7_library_index_sequence TAATCAT
p7_library_oligo_sequence CAAGCAGAAGACGGCATACGAGATatgattaGTGACTGGAGTTCAGACGTGT
phylum Chordata
prior_genetics unknown
sample_quality unknown
sample_submission_date 2020-09-17
sequence_length 100bp PE
sequencing_facility BRF
sequencing_platform Illumina NovaSeq SP 200 cycle
sex female
software_version unknown
source_population unknown
species obesulus
species_name
state_or_region Australian Capital Territory
subspecies_or_variant NA
taxon_id 65612
taxonomic_group marsupial
ticket BPAOPS-957
tissue_collection unknown
tissue_number 6568006.0
tissue_preservation ethanol
tissue_type ear epithelium
trace_lab no
type_status unknown
voucher_id
voucher_number no voucher
voucher_or_tissue_number 6568006
wild_captive unknown