JSON

OMG Exon Capture Raw 102.100.100/55394 HWWJFAFXY None

Perameles bougainville, WAM M64998 Australia Western Australia

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
access_rights unknown
ala_species_name
ala_specimen_url NA
ancillary_notes NA
archive_ingestion_date 2020-03-30
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-893/
birth_date unknown
bpa_dataset_id 102.100.100/52620
bpa_library_id 102.100.100/55394
bpa_sample_id 102.100.100/41987
bpa_work_order
class Mammalia
collection_date 2003-07
collection_method unknown
collector unknown
collector_sample_id NA
common_name Western barred bandicoot
conservation_sample no
conservation_status NA
contextual_data_submission_date
coord_uncertainty_metres 10000.0
country Australia
custodian Kenny Travouillon
data_custodian Mark Eldridge
data_generated 2020-03-30
data_type Illumina FASTQ
dataset_url (ingested)
date_of_transfer 2020-03-30
death_date unknown
description Nextseq500 150PE - exon capture marsupial
dna_conc_ng_ul 229.9726674046
dna_extracted_by Anna MacDonald
dna_extraction_date 2018-12-10
dna_extraction_method salting out
dna_treatment 10 bioruptor cycles
experimental_design Nimblegen Exon Capture – single index
facility brf
facility_sample_id 55394_HWWJFAFXY_AATGATG
family Peramelidae
file 55394_HWWJFAFXY_AATGATG_S48_L001_R1_001.fastq.gz | 55394_HWWJFAFXY_AATGATG_S48_L001_R2_001.fastq.gz | 55394_HWWJFAFXY_AATGATG_S48_L002_R1_001.fastq.gz | 55394_HWWJFAFXY_AATGATG_S48_L002_R2_001.fastq.gz
flowcell_id HWWJFAFXY
folder_name NB501086_0360_AMacDonald_OzMammals_Marsupial_gDNA_exon_capture
genome_sample no
genome_status NA
genus Perameles
habitat unknown
identified_by B Maryan
institution_name Western Australian Museum
latitude -24.9
library_comments Library ng/ul is for region 200-800 bp done on GXII
library_location ANU EBL
library_ng_ul 2.0864139113
library_pcr_cycles 12.0
library_pcr_reps 1.0
library_prep_date 2019-10-24
library_prep_method Meyer and Kircher protocol
library_prepared_by Max Nekrasov | Peter Milburn | Anna MacDonald
library_status Data available
library_type exon capture
life_stage adult organism
location_generalisation 1km
location_text Bernier Island
longitude 113.1
n_libraries_pooled 96.0
omg_project Phylogenomics
order Peramelemorphia
p5_library_index_id NA
p5_library_index_sequence NA
p5_library_oligo_sequence NA
p7_library_index_id 48
p7_library_index_sequence AATGATG
p7_library_oligo_sequence CAAGCAGAAGACGGCATACGAGATcatcattGTGACTGGAGTTCAGACGTGT
phylogenomic_sample yes
phylogenomic_status library prep
phylum Chordata
prior_genetics unknown
sample_quality unknown
sample_submission_date 2020-03-30
sequence_length 150bp PE
sequencing_facility BRF
sequencing_platform Illumina NextSeq mid output 300 cycle
sex female
software_version Unknown
source_population unknown
species bougainville
species_name Perameles bougainville
state_or_region Western Australia
subspecies NA
taxon_id
taxonomic_group marsupial
ticket BPAOPS-893
tissue_collection Mammal
tissue_number WAM M64998
tissue_preservation unknown
tissue_type muscle
trace_lab no
type_status
voucher_id
voucher_number WAM M64998
voucher_or_tissue_number WAM M64998
wild_captive unknown