OMG Exon Capture Raw 102.100.100/55392 HWWJFAFXY None

Notamacropus irma, WAM M62349 Australia Western Australia

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
access_rights unknown
ala_specimen_url NA
ancillary_notes NA
archive_ingestion_date 2020-03-30
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-893/
birth_date unknown
bpa_dataset_id 102.100.100/52620
bpa_library_id 102.100.100/55392
bpa_sample_id 102.100.100/41985
class Mammalia
collection_date 1999-06-23
collection_method road kill
collector A Wayne
collector_sample_id NA
common_name Western brush wallaby
conservation_sample no
conservation_status NA
coord_uncertainty_metres 10000.0
country Australia
custodian Kenny Travouillon
data_custodian Mark Eldridge
data_generated 2020-03-30
data_type Illumina FASTQ
dataset_url (ingested)
date_of_transfer 2020-03-30
death_date unknown
description Nextseq500 150PE - exon capture marsupial
dna_conc_ng_ul 119.4414983155
dna_extracted_by Anna MacDonald
dna_extraction_date 2018-12-10
dna_extraction_method salting out
dna_treatment 10 bioruptor cycles
experimental_design Nimblegen Exon Capture – single index
facility brf
facility_sample_id 55392_HWWJFAFXY_AATAGTA
family Macropodidae
file 55392_HWWJFAFXY_AATAGTA_S32_L001_R1_001.fastq.gz | 55392_HWWJFAFXY_AATAGTA_S32_L001_R2_001.fastq.gz | 55392_HWWJFAFXY_AATAGTA_S32_L002_R1_001.fastq.gz | 55392_HWWJFAFXY_AATAGTA_S32_L002_R2_001.fastq.gz
flowcell_id HWWJFAFXY
folder_name NB501086_0360_AMacDonald_OzMammals_Marsupial_gDNA_exon_capture
genome_sample no
genome_status NA
genus Notamacropus
habitat unknown
identified_by B Maryan
institution_name Western Australian Museum
latitude -34.33
library_comments Library ng/ul is for region 200-800 bp done on GXII
library_location ANU EBL
library_ng_ul 7.1223239915
library_pcr_cycles 12.0
library_pcr_reps 1.0
library_prep_date 2019-10-24
library_prep_method Meyer and Kircher protocol
library_prepared_by Max Nekrasov | Peter Milburn | Anna MacDonald
library_status Data available
library_type exon capture
life_stage adult organism
location_generalisation 1km
location_text Perup, Manjimup
longitude 116.45
n_libraries_pooled 96.0
omg_project Phylogenomics
order Diprotodontia
p5_library_index_id NA
p5_library_index_sequence NA
p5_library_oligo_sequence NA
p7_library_index_id 32
p7_library_index_sequence AATAGTA
phylogenomic_sample yes
phylogenomic_status library prep
phylum Chordata
prior_genetics unknown
sample_quality unknown
sample_submission_date 2020-03-30
sequence_length 150bp PE
sequencing_facility BRF
sequencing_platform Illumina NextSeq mid output 300 cycle
sex male
software_version Unknown
source_population unknown
species irma
species_name Notamacropus irma
state_or_region Western Australia
subspecies NA
taxonomic_group marsupial
ticket BPAOPS-893
tissue_collection Mammal
tissue_number WAM M62349
tissue_preservation ethanol
tissue_type muscle
trace_lab no
voucher_number WAM M62349
voucher_or_tissue_number WAM M62349
wild_captive unknown