JSON

OMG Exon Capture Raw 102.100.100/55384 HWWJFAFXY None

Dorcopsis luctuosa, Dolu1 Papua New Guinea Transfly

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
access_rights unknown
ala_species_name
ala_specimen_url NA
ancillary_notes DNA exhausted
archive_ingestion_date 2020-03-30
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-893/
birth_date unknown
bpa_dataset_id 102.100.100/52620
bpa_library_id 102.100.100/55384
bpa_sample_id 102.100.100/41974
bpa_work_order
class Mammalia
collection_date unknown
collection_method unknown
collector unknown
collector_sample_id NA
common_name Grey dorcopsis
conservation_sample no
conservation_status NA
contextual_data_submission_date
coord_uncertainty_metres unknown
country Papua New Guinea
custodian Mark Eldridge
data_custodian Mark Eldridge
data_generated 2020-03-30
data_type Illumina FASTQ
dataset_url (ingested)
date_of_transfer 2020-03-30
death_date unknown
description Nextseq500 150PE - exon capture marsupial
dna_conc_ng_ul 140.0
dna_extracted_by unknown
dna_extraction_date unknown
dna_extraction_method unknown
dna_treatment 7 bioruptor cycles
experimental_design Nimblegen Exon Capture – single index
facility brf
facility_sample_id 55384_HWWJFAFXY_CGAGATC
family Macropodidae
file 55384_HWWJFAFXY_CGAGATC_S95_L001_R1_001.fastq.gz | 55384_HWWJFAFXY_CGAGATC_S95_L001_R2_001.fastq.gz | 55384_HWWJFAFXY_CGAGATC_S95_L002_R1_001.fastq.gz | 55384_HWWJFAFXY_CGAGATC_S95_L002_R2_001.fastq.gz
flowcell_id HWWJFAFXY
folder_name NB501086_0360_AMacDonald_OzMammals_Marsupial_gDNA_exon_capture
genome_sample no
genome_status NA
genus Dorcopsis
habitat unknown
identified_by unknown
institution_name Australian Museum
latitude
library_comments Library ng/ul is for region 200-800 bp done on GXII
library_location ANU EBL
library_ng_ul 13.6221405096
library_pcr_cycles 12.0
library_pcr_reps 1.0
library_prep_date 2019-10-24
library_prep_method Meyer and Kircher protocol
library_prepared_by Max Nekrasov | Peter Milburn | Anna MacDonald
library_status Data available
library_type exon capture
life_stage unknown
location_generalisation
location_text Serki Village
longitude
n_libraries_pooled 96.0
omg_project Phylogenomics
order Diprotodontia
p5_library_index_id NA
p5_library_index_sequence NA
p5_library_oligo_sequence NA
p7_library_index_id 95
p7_library_index_sequence CGAGATC
p7_library_oligo_sequence CAAGCAGAAGACGGCATACGAGATgatctcgGTGACTGGAGTTCAGACGTGT
phylogenomic_sample yes
phylogenomic_status library prep
phylum Chordata
prior_genetics unknown
sample_quality unknown
sample_submission_date 2020-03-30
sequence_length 150bp PE
sequencing_facility BRF
sequencing_platform Illumina NextSeq mid output 300 cycle
sex not determined
software_version Unknown
source_population unknown
species luctuosa
species_name
state_or_region Transfly
subspecies NA
taxon_id
taxonomic_group marsupial
ticket BPAOPS-893
tissue_collection Mammalogy
tissue_number Dolu1
tissue_preservation frozen
tissue_type DNA 1400ng/100ul
trace_lab no
type_status
voucher_id
voucher_number no voucher
voucher_or_tissue_number Dolu1
wild_captive unknown