OMG Exon Capture Raw 102.100.100/55289 H53KCAFX2 ACGTATG

Pogonomys loriae, 3492 Papua New Guinea unknown

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type illumina-exoncapture
access_rights no restrictions
ala_species_name
ala_specimen_url NA
ancillary_notes NA
archive_ingestion_date 2020-04-06
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-895/
birth_date unknown
bpa_dataset_id 102.100.100/52625
bpa_library_id 102.100.100/55289
bpa_sample_id 102.100.100/56564
bpa_work_order 40056
class Mammalia
collection_date unknown
collection_method unknown
collector unknown
collector_sample_id NA
common_name Large tree mouse
contextual_data_submission_date
coord_uncertainty_metres unknown
country Papua New Guinea
custodian unknown
data_custodian Kevin Rowe
data_generated 2020-04-06
data_type Illumina FASTQ
dataset_url (ingested)
date_of_transfer 2020-04-06
ddrad_data no
ddrad_dataset_ids NA
death_date unknown
description Nextseq500 150PE - exon capture marsupial
dna_conc_ng_ul 7.15
dna_extracted_by Kyle Armstrong
dna_extraction_date unknown
dna_extraction_method Phenol Chloroform Isoamyl
dna_treatment 0 bioruptor cycles
exon_capture_data yes
exon_capture_dataset_ids 52625.0
experimental_design Nimblegen Exon Capture – dual index
facility brf
facility_sample_id 55289_H53KCAFX2_ACGTATG
family Muridae
file 55289_H53KCAFX2_ACGTATG_S47_L001_R1_001.fastq.gz | 55289_H53KCAFX2_ACGTATG_S47_L001_R2_001.fastq.gz | 55289_H53KCAFX2_ACGTATG_S47_L002_R1_001.fastq.gz | 55289_H53KCAFX2_ACGTATG_S47_L002_R2_001.fastq.gz
flowcell_id H53KCAFX2
folder_name NB501086_0362_AMacDonald_OzMammals_Rodent_gDNA_exon_capture
genome_data no
genome_dataset_ids NA
genus Pogonomys
habitat unknown
identified_by Ken Aplin
institution_name Natural History Museum Giacomo Doria, Genoa, Italy
latitude
library_comments library ng/µL for 200-800 bp range
library_location ANU EBL
library_ng_ul 6.2439107133
library_pcr_cycles 15.0
library_pcr_reps 2.0
library_prep_date 2019-09-27
library_prep_method Meyer and Kircher protocol
library_prepared_by Kevin Rowe
library_status Data available
library_type exon capture
life_stage not determined
location_generalisation
location_text unknown
longitude
n_libraries_pooled 60
omg_project Phylogenomics
order Rodentia
p5_library_index_id 10
p5_library_index_sequence CCGGTAC
p5_library_oligo_sequence AATGATACGGCGACCACCGAGATCTACACgtaccggACACTCTTTCCCTACACGACGCTCTT
p7_library_index_id 58
p7_library_index_sequence ACGTATG
p7_library_oligo_sequence CAAGCAGAAGACGGCATACGAGATcatacgtGTGACTGGAGTTCAGACGTGT
phylum Chordata
prior_genetics unknown
sample_quality highly degraded
sample_submission_date 2020-04-06
sequence_length 150bp PE
sequencing_facility BRF
sequencing_platform Illumina NextSeq mid output 300 cycle
sex not determined
software_version unknown
source_population unknown
species loriae
species_name
state_or_region unknown
subspecies_or_variant NA
taxon_id 491866
taxonomic_group rodent
ticket BPAOPS-895
tissue_collection Zoological Collection
tissue_number 3492.0
tissue_preservation dried
tissue_type skull
trace_lab no
type_status cotype
voucher_id
voucher_number 3492
voucher_or_tissue_number 3492
wild_captive wild