OMG Exon Capture Raw 102.100.100/55287 H53KCAFX2 GCAGTCC

Pogonomys lepidus, 3257 Papua New Guinea Morobe Province

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
Sequence Data Type illumina-exoncapture
access_rights no restrictions
ala_specimen_url NA
ancillary_notes NA
archive_ingestion_date 2020-04-06
associated_media NA
barcode_id NA
birth_date unknown
bpa_dataset_id 102.100.100/52625
bpa_library_id 102.100.100/55287
bpa_sample_id 102.100.100/56562
bpa_work_order 40056
class Mammalia
collection_date unknown
collection_method unknown
collector unknown
collector_sample_id NA
common_name Huon tree mouse
coord_uncertainty_metres 50000.0
country Papua New Guinea
custodian unknown
data_custodian Kevin Rowe
data_generated 2020-04-06
data_type Illumina FASTQ
dataset_url (ingested)
date_of_transfer 2020-04-06
ddrad_data no
ddrad_dataset_ids NA
death_date unknown
description Nextseq500 150PE - exon capture marsupial
dna_conc_ng_ul 3.25
dna_extracted_by Kyle Armstrong
dna_extraction_date unknown
dna_extraction_method Phenol Chloroform Isoamyl
dna_treatment 0 bioruptor cycles
exon_capture_data yes
exon_capture_dataset_ids 52625.0
experimental_design Nimblegen Exon Capture – dual index
facility brf
facility_sample_id 55287_H53KCAFX2_GCAGTCC
family Muridae
file 55287_H53KCAFX2_GCAGTCC_S45_L001_R1_001.fastq.gz | 55287_H53KCAFX2_GCAGTCC_S45_L001_R2_001.fastq.gz | 55287_H53KCAFX2_GCAGTCC_S45_L002_R1_001.fastq.gz | 55287_H53KCAFX2_GCAGTCC_S45_L002_R2_001.fastq.gz
flowcell_id H53KCAFX2
folder_name NB501086_0362_AMacDonald_OzMammals_Rodent_gDNA_exon_capture
genome_data no
genome_dataset_ids NA
genus Pogonomys
habitat unknown
identified_by Ken Aplin
institution_name Natural History Museum Giacomo Doria, Genoa, Italy
library_comments library ng/µL for 200-800 bp range
library_location ANU EBL
library_ng_ul 11.1908883042
library_pcr_cycles 15.0
library_pcr_reps 2.0
library_prep_date 2019-09-27
library_prep_method Meyer and Kircher protocol
library_prepared_by Kevin Rowe
library_status Data available
library_type exon capture
life_stage not determined
location_generalisation 1km
location_text Huon Peninsula
n_libraries_pooled 60
omg_project Phylogenomics
order Rodentia
p5_library_index_id 07
p5_library_index_sequence CTCGATG
p7_library_index_id 55
p7_library_index_sequence GCAGTCC
phylum Chordata
prior_genetics unknown
sample_quality highly degraded
sample_submission_date 2020-04-06
sequence_length 150bp PE
sequencing_facility BRF
sequencing_platform Illumina NextSeq mid output 300 cycle
sex not determined
software_version unknown
source_population unknown
species lepidus
species_name Pogonomys lepidus
state_or_region Morobe Province
subspecies_or_variant NA
taxon_id 442599
taxonomic_group rodent
ticket BPAOPS-895
tissue_collection Zoological Collection
tissue_number 3257.0
tissue_preservation dried
tissue_type skull
trace_lab no
type_status cotype
voucher_number 3257
voucher_or_tissue_number 3257
wild_captive wild