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OMG Exon Capture Raw 102.100.100/55256 H53KCAFX2 TAATGCG

Pseudomys gouldii, BMNH 1855.12.24.149 Australia New South Wales

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type illumina-exoncapture
access_rights no restrictions
ala_species_name
ala_specimen_url NA
ancillary_notes NA
archive_ingestion_date 2020-04-06
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-895/
birth_date unknown
bpa_dataset_id 102.100.100/52625
bpa_library_id 102.100.100/55256
bpa_sample_id 102.100.100/56531
bpa_work_order 40056
class Mammalia
collection_date 1836-01-01
collection_method unknown
collector H M S Beagle Coxen
collector_sample_id NA
common_name Gould's mouse
contextual_data_submission_date
coord_uncertainty_metres unknown
country Australia
custodian Roberto Portela Miguez
data_custodian Kevin Rowe
data_generated 2020-04-06
data_type Illumina FASTQ
dataset_url (ingested)
date_of_transfer 2020-04-06
ddrad_data no
ddrad_dataset_ids NA
death_date unknown
description Nextseq500 150PE - exon capture marsupial
dna_conc_ng_ul 0.84
dna_extracted_by Kevin C Rowe
dna_extraction_date 2019-08-12
dna_extraction_method Phenol Chloroform Isoamyl
dna_treatment 0 bioruptor cycles
exon_capture_data yes
exon_capture_dataset_ids 52625.0
experimental_design Nimblegen Exon Capture – dual index
facility brf
facility_sample_id 55256_H53KCAFX2_TAATGCG
family Muridae
file 55256_H53KCAFX2_TAATGCG_S14_L001_R1_001.fastq.gz | 55256_H53KCAFX2_TAATGCG_S14_L001_R2_001.fastq.gz | 55256_H53KCAFX2_TAATGCG_S14_L002_R1_001.fastq.gz | 55256_H53KCAFX2_TAATGCG_S14_L002_R2_001.fastq.gz
flowcell_id H53KCAFX2
folder_name NB501086_0362_AMacDonald_OzMammals_Rodent_gDNA_exon_capture
genome_data no
genome_dataset_ids NA
genus Pseudomys
habitat unknown
identified_by Pierre-Henri Fabre
institution_name Natural History Museum, London
latitude
library_comments library ng/µL for 200-800 bp range
library_location ANU EBL
library_ng_ul 13.2534120775
library_pcr_cycles 15.0
library_pcr_reps 2.0
library_prep_date 2019-09-27
library_prep_method Meyer and Kircher protocol
library_prepared_by Kevin Rowe
library_status Data available
library_type exon capture
life_stage not determined
location_generalisation
location_text Upper Hunter to interior side of the Liverpool Range
longitude
n_libraries_pooled 60
omg_project Phylogenomics
order Rodentia
p5_library_index_id 16
p5_library_index_sequence TAATGCG
p5_library_oligo_sequence AATGATACGGCGACCACCGAGATCTACACcgcattaACACTCTTTCCCTACACGACGCTCTT
p7_library_index_id 16
p7_library_index_sequence TAATGCG
p7_library_oligo_sequence CAAGCAGAAGACGGCATACGAGATcgcattaGTGACTGGAGTTCAGACGTGT
phylum Chordata
prior_genetics unknown
sample_quality highly degraded
sample_submission_date 2020-04-06
sequence_length 150bp PE
sequencing_facility BRF
sequencing_platform Illumina NextSeq mid output 300 cycle
sex not determined
software_version unknown
source_population unknown
species gouldii
species_name
state_or_region New South Wales
subspecies_or_variant NA
taxon_id 187267
taxonomic_group rodent
ticket BPAOPS-895
tissue_collection Mammal
tissue_number BMNH 1855.12.24.149
tissue_preservation dried
tissue_type toe pad
trace_lab no
type_status holotype
voucher_id
voucher_number BMNH 1855.12.24.149
voucher_or_tissue_number BMNH 1855.12.24.149
wild_captive wild