JSON

OMG Exon Capture Raw 102.100.100/55238 H55FWAFX2 None

Solomys ponceleti, AM M.21863 Solomon Islands unknown

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
access_rights no restrictions
ala_species_name
ala_specimen_url NA
ancillary_notes NA
archive_ingestion_date 2020-04-01
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-894/
birth_date unknown
bpa_dataset_id 102.100.100/52624
bpa_library_id 102.100.100/55238
bpa_sample_id 102.100.100/56513
bpa_work_order
class Mammalia
collection_date 1990-03-14
collection_method unknown
collector Dr Harry E Parnaby
collector_sample_id NA
common_name Poncelet's naked-tailed rat
conservation_sample no
conservation_status NA
contextual_data_submission_date
coord_uncertainty_metres 0.001
country Solomon Islands
custodian Mark Eldridge
data_custodian Kevin Rowe
data_generated 2020-04-01
data_type Illumina FASTQ
dataset_url (ingested)
date_of_transfer 2020-04-01
death_date unknown
description Nextseq500 150PE - exon capture marsupial
dna_conc_ng_ul 2.8733333333
dna_extracted_by Amy Adams
dna_extraction_date 2019-07-02
dna_extraction_method Qiagen DNEasy
dna_treatment Covaris shearing
experimental_design Nimblegen Exon Capture – single index
facility brf
facility_sample_id 55238_H55FWAFX2_GCTAATC
family Muridae
file 55238_H55FWAFX2_GCTAATC_S90_L001_R1_001.fastq.gz | 55238_H55FWAFX2_GCTAATC_S90_L001_R2_001.fastq.gz | 55238_H55FWAFX2_GCTAATC_S90_L002_R1_001.fastq.gz | 55238_H55FWAFX2_GCTAATC_S90_L002_R2_001.fastq.gz
flowcell_id H55FWAFX2
folder_name NB501086_0361_AMacDonald_OzMammals_Rodent_gDNA_exon_capture
genome_sample no
genome_status NA
genus Solomys
habitat unknown
identified_by unknown
institution_name Australian Museum
latitude
library_comments
library_location ANU EBL
library_ng_ul 12.1020719719
library_pcr_cycles 13.0
library_pcr_reps 2.0
library_prep_date 2019-09-27
library_prep_method Meyer and Kircher protocol
library_prepared_by Kevin Rowe
library_status Data available
library_type exon capture
life_stage unknown
location_generalisation 1km
location_text unknown
longitude
n_libraries_pooled 94.0
omg_project Phylogenomics
order Rodentia
p5_library_index_id NA
p5_library_index_sequence NA
p5_library_oligo_sequence NA
p7_library_index_id 92.0
p7_library_index_sequence GCTAATC
p7_library_oligo_sequence CAAGCAGAAGACGGCATACGAGATgattagcGTGACTGGAGTTCAGACGTGT
phylogenomic_sample yes
phylogenomic_status library prep done
phylum Chordata
prior_genetics unknown
sample_quality good
sample_submission_date 2020-04-01
sequence_length 150bp PE
sequencing_facility BRF
sequencing_platform Illumina NextSeq mid output 300 cycle
sex female
software_version unknown
source_population unknown
species ponceleti
species_name Solomys ponceleti
state_or_region unknown
subspecies NA
taxon_id
taxonomic_group rodent
ticket BPAOPS-894
tissue_collection Mammalogy
tissue_number AM M.21863
tissue_preservation ethanol
tissue_type unknown
trace_lab no
type_status
voucher_id
voucher_number AM M.21863
voucher_or_tissue_number AM M.21863
wild_captive wild