OMG Exon Capture Raw 102.100.100/53403 AHGVYGBCX2 TCAGCTT

Isoodon obesulus, 1650 Australia Tasmania

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
Sequence Data Type illumina-exoncapture
access_rights no restrictions
ala_species_name
ala_specimen_url NA
ancillary_notes NA
archive_ingestion_date 2018-06-04
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-623/
birth_date unknown
bpa_dataset_id 102.100.100/52595
bpa_library_id 102.100.100/53403
bpa_sample_id 102.100.100/40697
bpa_work_order 40017
class Mammalia
collection_date unknown
collection_method unknown
collector unknown
collector_sample_id NA
common_name Southern brown bandicoot
contextual_data_submission_date
coord_uncertainty_metres unknown
country Australia
custodian Steve Cooper
data_custodian Steve Cooper
data_generated 2018-06-04
data_type Illumina FASTQ
dataset_url https://data.bioplatforms.com/dataset/c_52595_sn877_0569_amacdonald_ozmammals_marsupials_gdna_capture/resource/278503c3-4ca3-4a28-918b-5632a8781190
date_of_transfer 2018-06-04
ddrad_data no
ddrad_dataset_ids NA
death_date unknown
description HiSeq 2500 100bp PE - Marsupial genomic DNA
dna_conc_ng_ul 13.0
dna_extracted_by unknown
dna_extraction_date unknown
dna_extraction_method unknown
dna_treatment 14 bioruptor cycles
exon_capture_data yes
exon_capture_dataset_ids 52595.0
experimental_design Nimblegen Exon Capture - single index - marsupial V2
facility brf
facility_sample_id 53403_AHGVYGBCX2_TCAGCTT
family Peramelidae
file
flowcell_id AHGVYGBCX2
folder_name SN877_0569_AMacDonald_OzMammals_Marsupials_gDNA_capture
genome_data no
genome_dataset_ids NA
genus Isoodon
habitat unknown
identified_by unknown
institution_name South Australian Museum
latitude -43.0
library_comments Library ng/ul is for region 250-700 bp done on GXII
library_location ANU EBL
library_ng_ul 17.0326791595
library_pcr_cycles 12.0
library_pcr_reps 2.0
library_prep_date 2018-05-04
library_prep_method Meyer and Kircher protocol
library_prepared_by Anna MacDonald | Holly Sargent
library_status Capture completed
library_type exon capture
life_stage not determined
location_generalisation
location_text Peter Murrell Reserve
longitude 147.3
n_libraries_pooled 96
omg_project Conservation
order Peramelemorphia
p5_library_index_id
p5_library_index_sequence
p5_library_oligo_sequence
p7_library_index_id 65.0
p7_library_index_sequence TCAGCTT
p7_library_oligo_sequence CAAGCAGAAGACGGCATACGAGATaagctgaGTGACTGGAGTTCAGACGTGT
phylum Chordata
prior_genetics VWF | BRCA1
sample_quality high molecular weight
sample_submission_date 2018-06-04
sequence_length 100bp PE
sequencing_facility BRF
sequencing_platform Illumina HiSeq 2500 RAPID
sex not determined
software_version unknown
source_population unknown
species obesulus
species_name Isoodon obesulus
state_or_region Tasmania
subspecies_or_variant affinis
taxon_id 120742
taxonomic_group marsupial
ticket BPAOPS-623
tissue_collection unknown
tissue_number 1650.0
tissue_preservation unknown
tissue_type unknown
trace_lab no
type_status unknown
voucher_id
voucher_number no voucher
voucher_or_tissue_number 1650
wild_captive wild