JSON

OMG Exon Capture Raw 102.100.100/364475 BHYCGCDRXX GACTTCT

Pseudocheirus peregrinus, QM JM18483 unknown unknown

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
Sequence Data Type
access_rights unknown
ala_species_name
ala_specimen_url NA
ancillary_notes NA
archive_ingestion_date 2021-03-03
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-1032/
birth_date unknown
bpa_dataset_id 102.100.100/52647
bpa_library_id 102.100.100/364475
bpa_sample_id 102.100.100/362304
bpa_work_order 40074
class Mammalia
collection_date unknown
collection_method unknown
collector unknown
collector_sample_id unknown
common_name Common ringtail possum
contextual_data_submission_date
coord_uncertainty_metres
country unknown
custodian Jessica Worthington Wilmer
data_custodian Mark Eldridge
data_generated 2021-03-03
data_type Illumina FASTQ
dataset_url
date_of_transfer 2021-02-11
ddrad_data no
ddrad_dataset_ids NA
death_date unknown
description Novaseq 6000 A00548_0147_LBroady_52647_Marsupial_gDNA
dna_conc_ng_ul 16.3
dna_extracted_by Liz Broady
dna_extraction_date 2020-11-09
dna_extraction_method salting out
dna_treatment 2 biorupter cycles
exon_capture_data yes
exon_capture_dataset_ids 52647.0
experimental_design Nimblegen Exon Capture, marsupial probes V2, dual indexed
facility brf
facility_sample_id 364475_BHYCGCDRXX_GACTTCT
family Pseudocheiridae
file
flowcell_id BHYCGCDRXX
folder_name A00548_0147_LBroady_52647_Marsupial_gDNA
genome_data no
genome_dataset_ids NA
genus Pseudocheirus
habitat
identified_by unknown
institution_name Queensland Museum
latitude
library_comments qPCR results indicate that the target capture and enrichment was successful
library_location EBL main freezer
library_ng_ul 48.6
library_pcr_cycles 12.0
library_pcr_reps 2.0
library_prep_date 2021-01-11
library_prep_method Meyer and Kircher protocol
library_prepared_by Liz Broady
library_status Ready for sequencing
library_type Exon Capture
life_stage unknown
location_generalisation
location_text Atherton-Herberton Rd, at Cherry Tree Creek
longitude
n_libraries_pooled 288
omg_project Marsupial phylogenetics
order Diprotodontia
p5_library_index_id P5_indexing11
p5_library_index_sequence AACTCCG
p5_library_oligo_sequence AATGATACGGCGACCACCGAGATCTACACcggagttACACTCTTTCCCTACACGACGCTCTT
p7_library_index_id P7_indexing93
p7_library_index_sequence GACTTCT
p7_library_oligo_sequence CAAGCAGAAGACGGCATACGAGATagaagtcGTGACTGGAGTTCAGACGTGT
phylum Chordata
prior_genetics unknown
sample_quality unknown
sample_submission_date 2021-02-11
sequence_length 100bp PE
sequencing_facility BRF
sequencing_platform Illumina NovaSeq SP 200 cycle
sex not determined
software_version unknown
source_population unknown
species peregrinus
species_name
state_or_region unknown
subspecies_or_variant peregrinus
taxon_id 9333
taxonomic_group marsupial
ticket BPAOPS-1032
tissue_collection Mammals
tissue_number A003335
tissue_preservation unknown
tissue_type liver
trace_lab no
type_status
voucher_id
voucher_number QM JM18483
voucher_or_tissue_number QM JM18483
wild_captive unknown