JSON

OMG Exon Capture Raw 102.100.100/364466 BHYCGCDRXX ACGCAAC

Antechinus mimetes, NMV Z24871 Australia Victoria

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
Sequence Data Type
access_rights
ala_species_name
ala_specimen_url
ancillary_notes
archive_ingestion_date 2021-03-03
associated_media
barcode_id
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-1032/
birth_date
bpa_dataset_id 102.100.100/52647
bpa_library_id 102.100.100/364466
bpa_sample_id 102.100.100/362295
bpa_work_order 40074
class Mammalia
collection_date 2012-11-18
collection_method unknown
collector unknown
collector_sample_id KCR1821
common_name Mainland dusky antechinus
contextual_data_submission_date
coord_uncertainty_metres
country Australia
custodian Kevin Rowe
data_custodian Mark Eldridge
data_generated 2021-03-03
data_type Illumina FASTQ
dataset_url
date_of_transfer 2021-02-11
ddrad_data no
ddrad_dataset_ids NA
death_date
description Novaseq 6000 A00548_0147_LBroady_52647_Marsupial_gDNA
dna_conc_ng_ul 149.0
dna_extracted_by Liz Broady
dna_extraction_date 2020-09-07
dna_extraction_method salting out
dna_treatment 14 biorupter cycles
exon_capture_data yes
exon_capture_dataset_ids 52647.0
experimental_design Nimblegen Exon Capture, marsupial probes V2, dual indexed
facility brf
facility_sample_id 364466_BHYCGCDRXX_ACGCAAC
family Dasyuridae
file
flowcell_id BHYCGCDRXX
folder_name A00548_0147_LBroady_52647_Marsupial_gDNA
genome_data no
genome_dataset_ids NA
genus Antechinus
habitat
identified_by unknown
institution_name Museums Victoria
latitude -37.032781
library_comments qPCR results indicate that the target capture and enrichment was successful
library_location EBL main freezer
library_ng_ul 62.0
library_pcr_cycles 12.0
library_pcr_reps 2.0
library_prep_date 2021-01-11
library_prep_method Meyer and Kircher protocol
library_prepared_by Liz Broady
library_status Ready for sequencing
library_type Exon Capture
life_stage
location_generalisation
location_text Grampians National Park, Mount Difficult Road
longitude 142.46347
n_libraries_pooled 288
omg_project Marsupial phylogenetics
order Dasyuromorphia
p5_library_index_id P5_indexing22
p5_library_index_sequence GCATTGG
p5_library_oligo_sequence AATGATACGGCGACCACCGAGATCTACACccaatgcACACTCTTTCCCTACACGACGCTCTT
p7_library_index_id P7_indexing21
p7_library_index_sequence ACGCAAC
p7_library_oligo_sequence CAAGCAGAAGACGGCATACGAGATgttgcgtGTGACTGGAGTTCAGACGTGT
phylum Chordata
prior_genetics
sample_quality unknown
sample_submission_date 2021-02-11
sequence_length 100bp PE
sequencing_facility BRF
sequencing_platform Illumina NovaSeq SP 200 cycle
sex Female
software_version unknown
source_population
species mimetes
species_name Antechinus mimetes
state_or_region Victoria
subspecies_or_variant
taxon_id 2547910
taxonomic_group marsupial
ticket BPAOPS-1032
tissue_collection Mammalogy
tissue_number NMV Z24871
tissue_preservation ethanol
tissue_type heart | liver | muscle
trace_lab no
type_status
voucher_id
voucher_number check
voucher_or_tissue_number NMV Z24871
wild_captive unknown