JSON

OMG Exon Capture Raw 102.100.100/364459 BHYCGCDRXX TACTTAG

Antechinus swainsonii, ANWC M28449 Australia New South Wales

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
Sequence Data Type
access_rights
ala_species_name
ala_specimen_url
ancillary_notes
archive_ingestion_date 2021-03-03
associated_media
barcode_id
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-1032/
birth_date
bpa_dataset_id 102.100.100/52647
bpa_library_id 102.100.100/364459
bpa_sample_id 102.100.100/362288
bpa_work_order 40074
class Mammalia
collection_date 1995
collection_method unknown
collector unknown
collector_sample_id
common_name Dusky antechinus
contextual_data_submission_date
coord_uncertainty_metres
country Australia
custodian Leo Joseph
data_custodian Mark Eldridge
data_generated 2021-03-03
data_type Illumina FASTQ
dataset_url
date_of_transfer 2021-02-11
ddrad_data no
ddrad_dataset_ids NA
death_date
description Novaseq 6000 A00548_0147_LBroady_52647_Marsupial_gDNA
dna_conc_ng_ul 3.47
dna_extracted_by Liz Broady
dna_extraction_date 2020-09-21
dna_extraction_method salting out
dna_treatment 9 biorupter cycles
exon_capture_data yes
exon_capture_dataset_ids 52647.0
experimental_design Nimblegen Exon Capture, marsupial probes V2, dual indexed
facility brf
facility_sample_id 364459_BHYCGCDRXX_TACTTAG
family Dasyuridae
file
flowcell_id BHYCGCDRXX
folder_name A00548_0147_LBroady_52647_Marsupial_gDNA
genome_data no
genome_dataset_ids NA
genus Antechinus
habitat
identified_by unknown
institution_name Australian National Wildlife Collection
latitude -36.4
library_comments qPCR results indicate that the target capture and enrichment was successful
library_location EBL main freezer
library_ng_ul 31.2
library_pcr_cycles 12.0
library_pcr_reps 2.0
library_prep_date 2021-01-11
library_prep_method Meyer and Kircher protocol
library_prepared_by Liz Broady
library_status Ready for sequencing
library_type Exon Capture
life_stage
location_generalisation
location_text THE PARALYSER, MT PERISHER, KOSCIUSZKO NATIONAL PARK
longitude 148.3667
n_libraries_pooled 288
omg_project Marsupial phylogenetics
order Dasyuromorphia
p5_library_index_id P5_indexing16
p5_library_index_sequence TAATGCG
p5_library_oligo_sequence AATGATACGGCGACCACCGAGATCTACACcgcattaACACTCTTTCCCTACACGACGCTCTT
p7_library_index_id P7_indexing60
p7_library_index_sequence TACTTAG
p7_library_oligo_sequence CAAGCAGAAGACGGCATACGAGATctaagtaGTGACTGGAGTTCAGACGTGT
phylum Chordata
prior_genetics
sample_quality unknown
sample_submission_date 2021-02-11
sequence_length 100bp PE
sequencing_facility BRF
sequencing_platform Illumina NovaSeq SP 200 cycle
sex male
software_version unknown
source_population
species swainsonii
species_name Antechinus swainsonii
state_or_region New South Wales
subspecies_or_variant
taxon_id 9284
taxonomic_group marsupial
ticket BPAOPS-1032
tissue_collection Mammal
tissue_number ANWC M28449
tissue_preservation unknown
tissue_type liver
trace_lab no
type_status
voucher_id
voucher_number ANWC M28449
voucher_or_tissue_number ANWC M28449
wild_captive unknown