JSON

OMG Exon Capture Raw 102.100.100/364454 BHYCGCDRXX CATGCTC

Osphranter antilopinus, AM M.47330.001 Australia Northern Territory

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
Sequence Data Type illumina-exoncapture
access_rights unknown
ala_species_name
ala_specimen_url NA
ancillary_notes Form information: Tissue only (no specimen voucher in the collection) and the AM registration tag is stored in the unused tags folder. Original notes: Haplotype from Eldridge et al. 2014: 29.
archive_ingestion_date 2021-02-12
associated_media unknown
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-1032/
birth_date unknown
bpa_dataset_id 102.100.100/52647
bpa_library_id 102.100.100/364454
bpa_sample_id 102.100.100/362283
bpa_work_order 40074
class Mammalia
collection_date 2005-07-07
collection_method Animal in care (wildlife carers)
collector Euan Ritchie | Mark D Eldridge
collector_sample_id unknown
common_name Antilopine kangaroo
contextual_data_submission_date
coord_uncertainty_metres unknown
country Australia
custodian Mark Eldridge | Australian Museum
data_custodian Mark Eldridge
data_generated 2021-02-12
data_type Illumina FASTQ
dataset_url
date_of_transfer 2021-02-11
ddrad_data no
ddrad_dataset_ids NA
death_date unknown
description Novaseq 6000 A00548_0147_LBroady_52647_Marsupial_gDNA
dna_conc_ng_ul 40ng/ul in 110ul
dna_extracted_by Australian Museum
dna_extraction_date unknown
dna_extraction_method unknown
dna_treatment 16 biorupter cycles
exon_capture_data yes
exon_capture_dataset_ids 52647.0
experimental_design Nimblegen Exon Capture, marsupial probes V2, dual indexed
facility brf
facility_sample_id 364454_BHYCGCDRXX_CATGCTC
family Macropodidae
file
flowcell_id BHYCGCDRXX
folder_name A00548_0147_LBroady_52647_Marsupial_gDNA
genome_data no
genome_dataset_ids NA
genus Osphranter
habitat unknown
identified_by unknown
institution_name Australian Museum
latitude -13.75
library_comments qPCR results indicate that the target capture and enrichment was successful
library_location EBL main freezer
library_ng_ul 44.6
library_pcr_cycles 12.0
library_pcr_reps 2.0
library_prep_date 2021-01-11
library_prep_method Meyer and Kircher protocol
library_prepared_by Liz Broady
library_status Ready for sequencing
library_type Exon Capture
life_stage 2
location_generalisation
location_text Daly River
longitude 130.683
n_libraries_pooled 288
omg_project Marsupial phylogenetics
order Diprotodontia
p5_library_index_id P5_indexing22
p5_library_index_sequence GCATTGG
p5_library_oligo_sequence AATGATACGGCGACCACCGAGATCTACACccaatgcACACTCTTTCCCTACACGACGCTCTT
p7_library_index_id P7_indexing20
p7_library_index_sequence CATGCTC
p7_library_oligo_sequence CAAGCAGAAGACGGCATACGAGATgagcatgGTGACTGGAGTTCAGACGTGT
phylum Chordata
prior_genetics unknown
sample_quality unknown
sample_submission_date 2021-02-11
sequence_length 100bp PE
sequencing_facility BRF
sequencing_platform Illumina NovaSeq SP 200 cycle
sex male
software_version unknown
source_population unknown
species antilopinus
species_name Osphranter antilopinus
state_or_region Northern Territory
subspecies_or_variant NA
taxon_id 9314
taxonomic_group marsupial
ticket BPAOPS-1032
tissue_collection Mammalogy
tissue_number EBU 68780
tissue_preservation unknown
tissue_type unknown
trace_lab no
type_status unknown
voucher_id
voucher_number AM M.47330.001
voucher_or_tissue_number AM M.47330.001
wild_captive unknown