JSON

OMG Exon Capture Raw 102.100.100/364432 BHYCGCDRXX TCATGGT

Macropus fuliginosus, ABTC83543 Australia South Australia

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type
access_rights unknown
ala_species_name
ala_specimen_url
ancillary_notes
archive_ingestion_date 2021-03-03
associated_media
barcode_id
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-1032/
birth_date
bpa_dataset_id 102.100.100/52647
bpa_library_id 102.100.100/364432
bpa_sample_id 102.100.100/362261
bpa_work_order 40074
class Mammalia
collection_date 2000-06-13
collection_method unknown
collector Beveridge, Ian
collector_sample_id
common_name Western grey kangaroo
contextual_data_submission_date
coord_uncertainty_metres
country Australia
custodian Steve Donnellan
data_custodian Mark Eldridge
data_generated 2021-03-03
data_type Illumina FASTQ
dataset_url
date_of_transfer 2021-02-11
ddrad_data no
ddrad_dataset_ids NA
death_date
description Novaseq 6000 A00548_0147_LBroady_52647_Marsupial_gDNA
dna_conc_ng_ul 6.58
dna_extracted_by Liz Broady
dna_extraction_date 2020-10-07
dna_extraction_method salting out
dna_treatment 14 biorupter cycles
exon_capture_data yes
exon_capture_dataset_ids 52647.0
experimental_design Nimblegen Exon Capture, marsupial probes V2, dual indexed
facility brf
facility_sample_id 364432_BHYCGCDRXX_TCATGGT
family Macropodidae
file
flowcell_id BHYCGCDRXX
folder_name A00548_0147_LBroady_52647_Marsupial_gDNA
genome_data no
genome_dataset_ids NA
genus Macropus
habitat
identified_by unknown
institution_name Australian Biological Tissue Collection, South Australian Museum
latitude
library_comments qPCR results indicate that the target capture and enrichment was successful
library_location EBL main freezer
library_ng_ul 39.8
library_pcr_cycles 12.0
library_pcr_reps 2.0
library_prep_date 2021-01-11
library_prep_method Meyer and Kircher protocol
library_prepared_by Liz Broady
library_status Ready for sequencing
library_type Exon Capture
life_stage
location_generalisation
location_text D'Estrees Bay, Kangaroo Island
longitude
n_libraries_pooled 288
omg_project Marsupial phylogenetics
order Diprotodontia
p5_library_index_id P5_indexing20
p5_library_index_sequence CATGCTC
p5_library_oligo_sequence AATGATACGGCGACCACCGAGATCTACACgagcatgACACTCTTTCCCTACACGACGCTCTT
p7_library_index_id P7_indexing34
p7_library_index_sequence TCATGGT
p7_library_oligo_sequence CAAGCAGAAGACGGCATACGAGATaccatgaGTGACTGGAGTTCAGACGTGT
phylum Chordata
prior_genetics
sample_quality unknown
sample_submission_date 2021-02-11
sequence_length 100bp PE
sequencing_facility BRF
sequencing_platform Illumina NovaSeq SP 200 cycle
sex
software_version unknown
source_population
species fuliginosus
species_name
state_or_region South Australia
subspecies_or_variant fuliginosus
taxon_id 9316
taxonomic_group marsupial
ticket BPAOPS-1032
tissue_collection Mammal
tissue_number ABTC83543
tissue_preservation frozen
tissue_type liver | kidney
trace_lab no
type_status
voucher_id
voucher_number no voucher
voucher_or_tissue_number ABTC83543
wild_captive unknown