JSON

OMG Exon Capture Raw 102.100.100/364393 BHYCGCDRXX TTAACTC

Phalanger mimicus, AM M.13870.001 Papua New Guinea Chimbu Province

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
Sequence Data Type illumina-exoncapture
access_rights unknown
ala_species_name
ala_specimen_url NA
ancillary_notes Taxon ID is for genus level
archive_ingestion_date 2021-02-12
associated_media unknown
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-1031/
birth_date unknown
bpa_dataset_id 102.100.100/52646
bpa_library_id 102.100.100/364393
bpa_sample_id 102.100.100/362171
bpa_work_order 40074
class Mammalia
collection_date 1984-05-14
collection_method unknown
collector Ken P Aplin
collector_sample_id unknown
common_name Southern common cuscus
contextual_data_submission_date
coord_uncertainty_metres unknown
country Papua New Guinea
custodian Mark Eldridge | Australian Museum
data_custodian Mark Eldridge
data_generated 2021-02-12
data_type Illumina FASTQ
dataset_url
date_of_transfer 2021-02-11
ddrad_data no
ddrad_dataset_ids NA
death_date unknown
description Novaseq 6000 A00548_0147_LBroady_52646_Marsupial_gDNA
dna_conc_ng_ul 34.3
dna_extracted_by Liz Broady
dna_extraction_date 2020-09-24
dna_extraction_method salting out
dna_treatment 18 biorupter cycles
exon_capture_data yes
exon_capture_dataset_ids 52646.0
experimental_design Nimblegen Exon Capture, marsupial probes V2, dual indexed
facility brf
facility_sample_id 364393_BHYCGCDRXX_TTAACTC
family Phalangeridae
file
flowcell_id BHYCGCDRXX
folder_name A00548_0147_LBroady_52646_Marsupial_gDNA
genome_data no
genome_dataset_ids NA
genus Phalanger
habitat unknown
identified_by unknown
institution_name Australian Museum
latitude
library_comments qPCR indicates that target capture and enrichment was successful
library_location EBL main freezer
library_ng_ul 15.4
library_pcr_cycles 12.0
library_pcr_reps 2.0
library_prep_date 2021-01-05
library_prep_method Meyer and Kircher protocol
library_prepared_by Liz Broady
library_status Ready for sequencing
library_type Exon Capture
life_stage not determined
location_generalisation
location_text Mt Karimui E slopes, Doido
longitude
n_libraries_pooled 288
omg_project Marsupial phylogenetics
order Diprotodontia
p5_library_index_id P5_indexing19
p5_library_index_sequence GAATCTC
p5_library_oligo_sequence AATGATACGGCGACCACCGAGATCTACACgagattcACACTCTTTCCCTACACGACGCTCTT
p7_library_index_id P7_indexing74
p7_library_index_sequence TTAACTC
p7_library_oligo_sequence CAAGCAGAAGACGGCATACGAGATgagttaaGTGACTGGAGTTCAGACGTGT
phylum Chordata
prior_genetics unknown
sample_quality unknown
sample_submission_date 2021-02-11
sequence_length 100bp PE
sequencing_facility BRF
sequencing_platform Illumina NovaSeq SP 200 cycle
sex not determined
software_version unknown
source_population unknown
species mimicus
species_name
state_or_region Chimbu Province
subspecies_or_variant mimicus
taxon_id 38622
taxonomic_group marsupial
ticket BPAOPS-1031
tissue_collection Mammalogy
tissue_number EBU 13457
tissue_preservation unknown
tissue_type liver
trace_lab no
type_status unknown
voucher_id
voucher_number AM M.13870.001
voucher_or_tissue_number AM M.13870.001
wild_captive unknown