JSON

OMG Exon Capture Raw 102.100.100/364379 BHYCGCDRXX TACTTAG

Pseudocheirus peregrinus, ANWC M16365 Australia Queensland

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
Sequence Data Type illumina-exoncapture
access_rights unknown
ala_species_name
ala_specimen_url NA
ancillary_notes M.49175
archive_ingestion_date 2021-02-12
associated_media unknown
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-1031/
birth_date unknown
bpa_dataset_id 102.100.100/52646
bpa_library_id 102.100.100/364379
bpa_sample_id 102.100.100/362193
bpa_work_order 40074
class Mammalia
collection_date 1991-08-11
collection_method unknown
collector unknown
collector_sample_id unknown
common_name Common ringtail possum
contextual_data_submission_date
coord_uncertainty_metres unknown
country Australia
custodian Leo Joseph
data_custodian Mark Eldridge
data_generated 2021-02-12
data_type Illumina FASTQ
dataset_url
date_of_transfer 2021-02-11
ddrad_data no
ddrad_dataset_ids NA
death_date unknown
description Novaseq 6000 A00548_0147_LBroady_52646_Marsupial_gDNA
dna_conc_ng_ul 41.8
dna_extracted_by Liz Broady
dna_extraction_date 2020-09-16
dna_extraction_method salting out
dna_treatment 20 biorupter cycles
exon_capture_data yes
exon_capture_dataset_ids 52646.0
experimental_design Nimblegen Exon Capture, marsupial probes V2, dual indexed
facility brf
facility_sample_id 364379_BHYCGCDRXX_TACTTAG
family Pseudocheiridae
file
flowcell_id BHYCGCDRXX
folder_name A00548_0147_LBroady_52646_Marsupial_gDNA
genome_data no
genome_dataset_ids NA
genus Pseudocheirus
habitat unknown
identified_by unknown
institution_name Australian National Wildlife Collection
latitude -22.7175
library_comments qPCR indicates that target capture and enrichment was successful
library_location EBL main freezer
library_ng_ul 11.2
library_pcr_cycles 12.0
library_pcr_reps 2.0
library_prep_date 2021-01-05
library_prep_method Meyer and Kircher protocol
library_prepared_by Liz Broady
library_status Ready for sequencing
library_type Exon Capture
life_stage not determined
location_generalisation
location_text SHOALWATER BAY ARMY TRAINING RESERVE, N OF ROCKHAMPTON
longitude 150.5078
n_libraries_pooled 288
omg_project Marsupial phylogenetics
order Diprotodontia
p5_library_index_id P5_indexing21
p5_library_index_sequence ACGCAAC
p5_library_oligo_sequence AATGATACGGCGACCACCGAGATCTACACgttgcgtACACTCTTTCCCTACACGACGCTCTT
p7_library_index_id P7_indexing60
p7_library_index_sequence TACTTAG
p7_library_oligo_sequence CAAGCAGAAGACGGCATACGAGATctaagtaGTGACTGGAGTTCAGACGTGT
phylum Chordata
prior_genetics unknown
sample_quality unknown
sample_submission_date 2021-02-11
sequence_length 100bp PE
sequencing_facility BRF
sequencing_platform Illumina NovaSeq SP 200 cycle
sex female
software_version unknown
source_population unknown
species peregrinus
species_name Pseudocheirus peregrinus
state_or_region Queensland
subspecies_or_variant peregrinus
taxon_id 9333
taxonomic_group marsupial
ticket BPAOPS-1031
tissue_collection Mammal
tissue_number ANWC M16365
tissue_preservation unknown
tissue_type liver
trace_lab no
type_status unknown
voucher_id
voucher_number ANWC M16365
voucher_or_tissue_number ANWC M16365
wild_captive unknown