OMG Exon Capture Raw 102.100.100/363791 AHV5LWDRXX GCATTGG

Dasyurus hallucatus, 1623 Australia Northern Territory

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
Sequence Data Type illumina-exoncapture
access_rights no restrictions
ala_species_name
ala_specimen_url NA
ancillary_notes DNA eluted in 200 uL
archive_ingestion_date 2020-12-10
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/exon_capture/brf/BPAOPS-1014/
birth_date unknown
bpa_dataset_id 102.100.100/52643
bpa_library_id 102.100.100/363791
bpa_sample_id 102.100.100/56877
bpa_work_order 40070
class Mammalia
collection_date 2018-05-18
collection_method unknown
collector Skye Cameron
collector_sample_id unknown
common_name Northern quoll
contextual_data_submission_date
coord_uncertainty_metres unknown
country Australia
custodian Brenton von Takach | Sam Banks
data_custodian Sam Banks
data_generated 2020-12-10
data_type Illumina FASTQ
dataset_url
date_of_transfer 2020-12-07
ddrad_data yes
ddrad_dataset_ids 52623.0
death_date unknown
description Novaseq 6000 A00548_0130_AMacDonald_52643_Marsupial_gDNA
dna_conc_ng_ul 8.62
dna_extracted_by Brenton von Takach
dna_extraction_date 2019-11-01
dna_extraction_method Qiagen DNeasy 96 Blood and Tissue Kit
dna_treatment 12 biorupter cycles
exon_capture_data yes
exon_capture_dataset_ids 52643.0
experimental_design Nimblegen Exon Capture, marsupial probes V2, dual indexed
facility brf
facility_sample_id 363791_AHV5LWDRXX_GCATTGG
family Dasyuridae
file
flowcell_id AHV5LWDRXX
folder_name A00548_0130_AMacDonald_52643_Marsupial_gDNA.tar
genome_data no
genome_dataset_ids NA
genus Dasyurus
habitat unknown
identified_by Skye Cameron
institution_name Charles Darwin University
latitude -13.88012471
library_comments library ng/┬ÁL for 200-1000 bp range
library_location ANU EBL
library_ng_ul 19.4369744888
library_pcr_cycles 12.0
library_pcr_reps 2.0
library_prep_date 2020-10-27
library_prep_method Meyer and Kircher protocol
library_prepared_by Anna MacDonald | Liz Broady
library_status Submitted for sequencing
library_type exon capture
life_stage not determined
location_generalisation
location_text Groote Eylandt, Groote West, hw7
longitude 136.574113
n_libraries_pooled 288
omg_project Conservation
order Dasyuromorphia
p5_library_index_id 08
p5_library_index_sequence GCTCGAA
p5_library_oligo_sequence AATGATACGGCGACCACCGAGATCTACACttcgagcACACTCTTTCCCTACACGACGCTCTT
p7_library_index_id 22.0
p7_library_index_sequence GCATTGG
p7_library_oligo_sequence CAAGCAGAAGACGGCATACGAGATccaatgcGTGACTGGAGTTCAGACGTGT
phylum Chordata
prior_genetics none
sample_quality unknown
sample_submission_date 2020-12-07
sequence_length 100bp PE
sequencing_facility BRF
sequencing_platform Illumina NovaSeq SP 200 cycle
sex female
software_version
source_population unknown
species hallucatus
species_name Dasyurus hallucatus
state_or_region Northern Territory
subspecies_or_variant NA
taxon_id 9280
taxonomic_group marsupial
ticket BPAOPS-1014
tissue_collection unknown
tissue_number 1623.0
tissue_preservation ethanol | frozen -20C
tissue_type ear epithelium
trace_lab no
type_status unknown
voucher_id
voucher_number no voucher
voucher_or_tissue_number 1623
wild_captive wild