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OMG 10x Illumina Raw 102.100.100/40136, 102.100.100/40138 HMCKTBBXX

102.100.100/52872, 102.100.100/52873 Perameles gunnii, B50163 Australia Victoria. Burramys parvus, 0241 Australia Victoria

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type illumina-10x
access_rights temporary embargo
ala_specimen_url NA
ancillary_notes
archive_ingestion_date 2017-11-25
archive_name 171009_ST-K00108_0067_BHMCKTBBXX.tar
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/10x_raw_agrf/BPAOPS-365/
birth_date
bpa_dataset_id
bpa_dataset_ids 102.100.100/40137, 102.100.100/40139
bpa_library_id
bpa_library_ids 102.100.100/52872, 102.100.100/52873
bpa_sample_id
bpa_sample_ids 102.100.100/40136, 102.100.100/40138
bpa_work_order 40008
class Mammalia
collection_date
collection_method unknown
collector
collector_sample_id
common_name
contextual_data_submission_date
coord_uncertainty_metres
country Australia
custodian Andrew Weeks
data_custodian Andrew Weeks
data_generated 2017-11-25
data_type Illumina bcl (Illumina run directory)
dataset_url https://data.bioplatforms.com/dataset/bpa-omg-10x-raw-illumina-171009_st-k00108_0067_bhmcktbbxx_tar-hmcktbbxx
date_of_transfer 2017-10-24
ddrad_data no
ddrad_dataset_ids NA
death_date
description 10X Genomics- 102.100.100/52872 and102.100.100/52873 - bcl
dna_conc_ng_ul unknown
dna_extracted_by Rahul Vivek Rane
dna_extraction_date
dna_extraction_method Qiagen genomic tip 20G
dna_treatment >50kb size selection
exon_capture_data no
exon_capture_dataset_ids NA
experimental_design 10X Chromium, 2 lanes HiSeq 2500 Rapid (150bp PE)
facility_sample_id unknown
family
file 171009_ST-K00108_0067_BHMCKTBBXX.tar
flow_id HMCKTBBXX
flowcell_id HMCKTBBXX
folder_name 171009_ST-K00108_0067_BHMCKTBBXX.tar
genome_data yes
genome_dataset_ids
genus
habitat
identified_by
institution_name University of Melbourne
latitude
library_comments NA
library_index_id NA
library_index_sequence NA
library_location AGRF
library_ng_ul unknown
library_oligo_sequence NA
library_pcr_cycles NA
library_pcr_reps NA
library_prep_date
library_prep_method 10X Chromium
library_prepared_by
library_status Sequenced
library_type genome linked read
life_stage adult organism
location_text
longitude
n_libraries_pooled 1
omg_project Whole genomes
order
phylum Chordata
prior_genetics unknown
sample_quality limited degradation
sample_submission_date 2017-10-24
sequence_length 150bp PE
sequencing_facility AGRF
sequencing_platform Illumina HiSeq 4000
sex female
software_version RTA 2.7.7
source_population
species
state_or_region Victoria
subspecies_or_variant
taxon_id
taxonomic_group marsupial
ticket BPAOPS-365
tissue_collection Mammal
tissue_number
tissue_preservation
tissue_type
trace_lab no
type_status unknown
voucher_number no voucher
voucher_or_tissue_number
wild_captive