OMG 10x Illumina Raw 102.100.100/40065 HCGFNBCXY

102.100.100/52868 Sminthopsis crassicaudata, Fy1 Australia Victoria

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type illumina-10x
access_rights NA
ala_specimen_url NA
ancillary_notes NA
archive_ingestion_date 2017-04-28
archive_name 170314_D00626_0270_BHCGFNBCXY.tar
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/10x_raw_agrf/BPAOPS-120/
birth_date 2014-04-14
bpa_dataset_id 102.100.100/40125
bpa_dataset_ids 102.100.100/40125
bpa_library_id 102.100.100/52868
bpa_library_ids 102.100.100/52868
bpa_sample_id 102.100.100/40065
bpa_sample_ids 102.100.100/40065
bpa_work_order 40001
class Mammalia
collection_date 2016-04-28
collection_method unknown
collector Stephen Frankenberg
collector_sample_id NA
common_name Fat-tailed dunnart
contextual_data_submission_date
coord_uncertainty_metres unknown
country Australia
custodian Andrew Pask
data_custodian Andy Pask
data_generated 2017-04-28
data_type Raw Illumina Run Folder
dataset_url https://data.bioplatforms.com/dataset/bpa-omg-10x-raw-illumina-102_100_100_40065-hcgfnbcxy
date_of_transfer 2017-03-29
ddrad_data no
ddrad_dataset_ids NA
death_date 2014-04-28
description 10X Genomics- 102.100.100/40065
dna_conc_ng_ul 500.0
dna_extracted_by Stephen Frankenberg
dna_extraction_date 2017-01-31
dna_extraction_method GeneElute Mammalian Genome DNA Miniprep Kit (Sigma) for initial lysis steps, but replacing the later column steps with phenol/chloroform extraction (to preserve high MW)
dna_treatment >50kb size selection
exon_capture_data no
exon_capture_dataset_ids NA
experimental_design 10X Chromium, 2 lanes HiSeq 2500 Rapid (150bp PE)
facility_sample_id unknown
family Dasyuridae
file 170314_D00626_0270_BHCGFNBCXY.tar
flow_id HCGFNBCXY
flowcell_id HCGFNBCXY
folder_name 170314_D00626_0270_BHCGFNBCXY
genome_data yes
genome_dataset_ids 40125 | 52597
genus Sminthopsis
habitat unknown
identified_by unknown
institution_name University of Melbourne
latitude
library_comments NA
library_index_id NA
library_index_sequence NA
library_location AGRF
library_ng_ul unknown
library_oligo_sequence NA
library_pcr_cycles NA
library_pcr_reps NA
library_prep_date
library_prep_method 10X Chromium
library_prepared_by AGRF
library_status Data available
library_type genome linked read
life_stage adult organism
location_text Captive colony
longitude
n_libraries_pooled 1
omg_project Whole genomes
order Dasyuromorphia
phylum Chordata
prior_genetics unknown
sample_quality high molecular weight
sample_submission_date 2017-03-29
sequence_length 150bp PE
sequencing_facility AGRF
sequencing_platform HiSeq 2500 RAPID
sex female
software_version RTA 1.18.66.3
source_population unknown
species crassicaudata
state_or_region Victoria
subspecies_or_variant NA
taxon_id 9301
taxonomic_group marsupial
ticket BPAOPS-120
tissue_collection unknown
tissue_number Fy1
tissue_preservation liquid nitrogen
tissue_type liver
trace_lab no
type_status unknown
voucher_number no voucher
voucher_or_tissue_number Fy1
wild_captive captive