JSON

OMG 10x Raw 102.100.100/41988 10X_HGYCLDRXX

102.100.100/54608 Dasyurus hallucatus, GAN: YLY17-02614 Australia Northern Territory

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
access_rights unknown
ala_species_name
ala_specimen_url NA
ancillary_notes Several DNA extractions sent to Ramaciotti for QC. The one used was FRA7478 A1. Animal named "Anarchy"
archive_ingestion_date 2019-11-25
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/10x_raw/BPAOPS-874/
birth_date 2017-10-31
bpa_dataset_id 102.100.100/52619
bpa_library_id 102.100.100/54608
bpa_sample_id 102.100.100/41988
bpa_work_order
class Mammalia
collection_date 2019-06-25
collection_method footpad used to established fibroblast cell line
collector Stephen Frankenberg
collector_sample_id GAN: YLY17-02614
common_name Northern quoll
conservation_sample no
conservation_status NA
contextual_data_submission_date
coord_uncertainty_metres unknown
country Australia
custodian Stephen Frankenberg
data_custodian Sam Banks | Paul Sunnucks
data_generated 2019-11-25
data_type Illumina FASTQ
dataset_url (ingested)
date_of_transfer 2019-11-25
death_date 2019-06-25
description 10X Genomics/NovaSeq 6000- Dasyurus DNA
dna_conc_ng_ul
dna_extracted_by Stephen Frankenberg
dna_extraction_date 2019-10-07
dna_extraction_method Qiagen PureGene kit
dna_treatment No size selection
experimental_design 10X Chromium, one NovaSeq 6000 S1 2x150bp lane
facility_sample_id FRA7478
family Dasyuridae
file 54608_S1_L001_I1_001.fastq.gz | 54608_S1_L001_R1_001.fastq.gz | 54608_S1_L001_R2_001.fastq.gz
flow_id 10X_HGYCLDRXX
flowcell_id HGYCLDRXX
folder_name 54608_OMG_UNSW_10X_HGYCLDRXX
genome_sample yes
genome_status need to extract
genus Dasyurus
habitat unknown
identified_by unknown
institution_name University of Melbourne
latitude unknown
library_comments
library_index_id Index E4
library_index_sequence TTCGCCCT; GGATGGGC; AATCAATG; CCGATTAA
library_location Ramaciotti, UNSW
library_ng_ul 13.3
library_oligo_sequence NA
library_pcr_cycles 10.0
library_pcr_reps NA
library_prep_date 2019-11-11
library_prep_method 10X Genomics Chromium
library_prepared_by Ramaciotti, UNSW
library_status Sequenced
library_type genome linked-read
life_stage adult organism
location_generalisation
location_text Berry Springs
longitude unknown
n_libraries_pooled 1.0
omg_project Whole genomes
order Dasyuromorphia
phylogenomic_sample no
phylogenomic_status NA
phylum Chordata
prior_genetics unknown
sample_quality unknown
sample_submission_date 2019-11-25
sequence_length 150bp PE
sequencing_facility Ramaciotti, UNSW
sequencing_platform NovaSeq 6000
sex male
software_version bcltofastq2 v2.19
source_population Territory Wildlife Park
species hallucatus
species_name
state_or_region Northern Territory
subspecies NA
taxon_id
taxonomic_group marsupial
ticket BPAOPS-874
tissue_collection unknown
tissue_number GAN: YLY17-02614
tissue_preservation unknown
tissue_type fibroblast cell line from footpad
trace_lab no
type_status
voucher_number no voucher
voucher_or_tissue_number GAN: YLY17-02614
wild_captive captive