JSON

OMG 10x Raw 102.100.100/41498 10X_H7WTTDRXX

102.100.100/52877 Gymnobelideus leadbeateri, POSS13 Australia Victoria

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
access_rights no restrictions
ala_species_name
ala_specimen_url NA
ancillary_notes Tissue cultured fibrobasts from external ear cartilage
archive_ingestion_date 2019-07-15
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/10x_raw/BPAOPS-829/
birth_date unknown
bpa_dataset_id 102.100.100/40133
bpa_library_id 102.100.100/52877
bpa_sample_id 102.100.100/41498
bpa_work_order
class Mammalia
collection_date 2018-05-28
collection_method nest box
collector Dan Harley | Zoos Victoria
collector_sample_id STGW_17_1M
common_name Leadbeater's possum
conservation_sample no
conservation_status NA
contextual_data_submission_date
coord_uncertainty_metres 10.0
country Australia
custodian Peter Temple-Smith
data_custodian Sam Banks
data_generated 2019-07-15
data_type Illumina FASTQ
dataset_url (ingested)
date_of_transfer 2019-06-14
death_date unknown
description 10X Genomics/NovaSeq 6000- Leadbeateri DNA
dna_conc_ng_ul
dna_extracted_by Seungmin Ham
dna_extraction_date unknown
dna_extraction_method unknown
dna_treatment >50kb size selection
experimental_design 10X Chromium, 2 lanes HiSeq 2500 Rapid (150bp PE)
facility_sample_id DEA6785A2
family Petauridae
file 52877_S1_L001_R1_001.fastq.gz| 52877_S1_L001_R2_001.fastq.gz | 52877_S1_L001_I1_001.fastq.gz | 52877_S1_L002_R1_001.fastq.gz | 52877_S1_L002_R2_001.fastq.gz | 52877_S1_L002_I1_001.fastq.gz
flow_id 10X_H7WTTDRXX
flowcell_id H7WTTDRXX
folder_name 40133_OMG_UNSW_10X_H7WTTDRXX
genome_sample yes
genome_status DNA extracted
genus Gymnobelideus
habitat Subalpine woodland
identified_by Dan Harley
institution_name Monash University
latitude 146.19
library_comments NA
library_index_id NA
library_index_sequence NA
library_location Ramaciotti
library_ng_ul unknown
library_oligo_sequence NA
library_pcr_cycles NA
library_pcr_reps NA
library_prep_date
library_prep_method 10X Chromium
library_prepared_by Ramaciotti
library_status Not yet extracted
library_type genome linked read
life_stage adult organism
location_generalisation
location_text Mount St Gwinear Road, Baw Baw National Park
longitude -37.5
n_libraries_pooled 1.0
omg_project Whole genomes
order Diprotodontia
phylogenomic_sample no
phylogenomic_status NA
phylum Chordata
prior_genetics unknown
sample_quality high quality
sample_submission_date 2019-06-14
sequence_length 150bp PE
sequencing_facility Ramaciotti, UNSW
sequencing_platform NovaSeq 6000
sex male
software_version bcltofastq2 v2.19
source_population Mt Saint Gwinear, Baw Baw National Park
species leadbeateri
species_name Gymnobelideus leadbeateri
state_or_region Victoria
subspecies NA
taxon_id
taxonomic_group marsupial
ticket BPAOPS-829
tissue_collection Australian Frozen Zoo
tissue_number POSS13B
tissue_preservation liquid nitrogen
tissue_type other
trace_lab no
type_status
voucher_number no voucher
voucher_or_tissue_number POSS13
wild_captive wild