OMG 10x Raw 102.100.100/41196 10X_H3FFVDRXX

102.100.100/54213 Macrotis lagotis, 00-06F0-4DBB_bilby2 Australia Western Australia

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
Sequence Data Type illumina-10x
access_rights location information restricted
ala_species_name
ala_specimen_url NA
ancillary_notes NA
archive_ingestion_date 2019-03-25
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/10x_raw/BPAOPS-797/
birth_date 2010
bpa_dataset_id 102.100.100/52604
bpa_library_id 102.100.100/54213
bpa_sample_id 102.100.100/41196
bpa_work_order 40035
class Mammalia
collection_date 2018
collection_method individual euthanased due to medical conditions
collector Peter Mawson | Perth Zoo
collector_sample_id 00-06F0-4DBB_bilby2
common_name Greater bilby
contextual_data_submission_date
coord_uncertainty_metres Perth zoo only
country Australia
custodian Katherine Belov
data_custodian Kathy Belov | Carolyn Hogg
data_generated 2019-03-25
data_type Illumina FASTQ
dataset_url (ingested)
date_of_transfer 2019-03-20
ddrad_data no
ddrad_dataset_ids NA
death_date 2018
description 10X Genomics/NovaSeq 6000- 41196 Bilby DNA
dna_conc_ng_ul unknown
dna_extracted_by Emma Peel
dna_extraction_date unknown
dna_extraction_method unknown
dna_treatment >50kb size selection
exon_capture_data no
exon_capture_dataset_ids NA
experimental_design 10X Chromium, NovaSeq 6000
facility_sample_id NA
family Thylacomyidae
file 41196_S1_L001_R1_001.fastq.gz | 41196_S1_L001_R2_001.fastq.gz |
flow_id 10X_H3FFVDRXX
flowcell_id H3FFVDRXX
folder_name 41196_OMG_UNSW_10X_H3FFVDRXX
genome_data yes
genome_dataset_ids 52604.0
genus Macrotis
habitat unknown
identified_by Peter Mawson | Perth Zoo
institution_name University of Sydney
latitude -31.98
library_comments NA
library_index_id NA
library_index_sequence NA
library_location Ramaciotti
library_ng_ul unknown
library_oligo_sequence NA
library_pcr_cycles NA
library_pcr_reps NA
library_prep_date
library_prep_method 10X Genomics Chromium
library_prepared_by Ramaciotti
library_status Data available
library_type genome linked read
life_stage adult organism
location_generalisation 1km
location_text Perth Zoo
longitude 115.85
n_libraries_pooled 1
omg_project Whole genomes
order Peramelemorphia
phylum Chordata
prior_genetics NA
sample_quality fresh frozen at -80
sample_submission_date 2019-03-20
sequence_length 150bp PE
sequencing_facility Ramaciotti
sequencing_platform Illumina HiSeq Xten
sex female
software_version bcl2fastq v2.20.0.422
source_population Australia, Western Australia, Kanyana Wildlife Rehab Centre, Monarto, Perth Zoo
species lagotis
species_name Macrotis lagotis
state_or_region Western Australia
subspecies_or_variant NA
taxon_id 92651
taxonomic_group marsupial
ticket BPAOPS-797
tissue_collection unknown
tissue_number 00-06F0-4DBB_bilby2
tissue_preservation frozen -80C
tissue_type spleen
trace_lab no
type_status unknown
voucher_id
voucher_number no voucher
voucher_or_tissue_number 00-06F0-4DBB_bilby2
wild_captive captive