OMG 10x Raw 102.100.100/40254 10X_H7JL7CCXY

102.100.100/52876 Bettongia gaimardi, Bga_MF001 Australia Australian Capital Territory

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
Sequence Data Type illumina-10x
access_rights no restrictions
ala_species_name
ala_specimen_url NA
ancillary_notes Two extractions from the same sample of this specimen. Dead pouch young retrieved from trap during population monitoring. Animal location is Mulligan's Flat, with this pouch young born approximately 3 years after the population was founded by animals translocated from Tasmania. Specimen not currently lodged in a museum collection. Voucher ID and collection details will be updated should this happen in future.
archive_ingestion_date 2018-04-03
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/10x_raw/BPAOPS-567/
birth_date unknown
bpa_dataset_id 102.100.100/40131
bpa_library_id 102.100.100/52876
bpa_sample_id 102.100.100/40254
bpa_work_order 40005
class Mammalia
collection_date 2016-04-01
collection_method trap
collector Adrian Manning
collector_sample_id Bga_MF001
common_name Eastern bettong
contextual_data_submission_date
coord_uncertainty_metres 200.0
country Australia
custodian Sam Banks
data_custodian Sam Banks
data_generated 2018-04-03
data_type Illumina FASTQ
dataset_url
date_of_transfer 2018-04-03
ddrad_data no
ddrad_dataset_ids NA
death_date unknown
description 10X Genomics- 102.100.100/40254
dna_conc_ng_ul 170.0
dna_extracted_by Kristen Abicair (ANU)
dna_extraction_date 2017-05-23
dna_extraction_method Qiagen genomic tip
dna_treatment >50kb size selection
exon_capture_data no
exon_capture_dataset_ids NA
experimental_design 10X Chromium, 2 lanes HiSeq 2500 Rapid (150bp PE)
facility_sample_id FR07935851
family Potoroidae
file 40254_S1_L001_R1_001.fastq.gz | 40254_S1_L001_R2_001.fastq.gz | 40254_S1_L008_R1_001.fastq.gz | 40254_S1_L008_R2_001.fastq.gz
flow_id 10X_H7JL7CCXY
flowcell_id H7JL7CCXY
folder_name 40254_OMG_UNSW_10X_H7JL7CCXY
genome_data yes
genome_dataset_ids 40131.0
genus Bettongia
habitat Woodland
identified_by Adrian Manning
institution_name Australian National University
latitude -35.1668
library_comments NA
library_index_id NA
library_index_sequence NA
library_location Ramaciotti
library_ng_ul unknown
library_oligo_sequence NA
library_pcr_cycles NA
library_pcr_reps NA
library_prep_date
library_prep_method 10X Chromium
library_prepared_by Ramaciotti
library_status Not yet extracted
library_type genome linked read
life_stage pouch young
location_generalisation
location_text Mulligan's Flat Woodland Sanctuary
longitude 149.1669
n_libraries_pooled 1
omg_project Whole genomes
order Diprotodontia
phylum Chordata
prior_genetics unknown
sample_quality unknown
sample_submission_date 2018-04-03
sequence_length 150bp PE
sequencing_facility Ramaciotti
sequencing_platform Illumina HiSeq Xten
sex male
software_version Illumina bcl2fastq 2.19.0
source_population Mulligan's Flat Woodland Sanctuary
species gaimardi
species_name Bettongia gaimardi
state_or_region Australian Capital Territory
subspecies_or_variant cuniculus
taxon_id 223568
taxonomic_group marsupial
ticket BPAOPS-567
tissue_collection Fenner School
tissue_number Bga_MF001
tissue_preservation ethanol | frozen
tissue_type muscle
trace_lab no
type_status unknown
voucher_id
voucher_number no voucher
voucher_or_tissue_number Bga_MF001
wild_captive wild