JSON

OMG 10x Illumina Processed 102.100.100/40138 HMCKTBBXX

102.100.100/52873 Burramys parvus, 0241 Australia Victoria

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
Sequence Data Type illumina-10x
access_rights temporary embargo
ala_species_name
ala_specimen_url NA
ancillary_notes NA
archive_ingestion_date 2017-11-25
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/10x_processed/BPAOPS-371/
birth_date 2010-02-01
bpa_dataset_id 102.100.100/40139
bpa_library_id 102.100.100/52873
bpa_sample_id 102.100.100/40138
bpa_work_order 40008
class Mammalia
collection_date 2015-11-06
collection_method unknown
collector Andrew Weeks
collector_sample_id 0241
common_name Mountain pygmy possum
contextual_data_submission_date
coord_uncertainty_metres 3.0
country Australia
custodian Andrew Weeks
data_custodian Andrew Weeks
data_generated 2017-11-25
data_type Illumina FASTQ
dataset_url https://data.bioplatforms.com/organization/dbaf22b0-0e9b-4b14-b405-9fc4d9181975?q=BPAOPS-371&tags=10x-processed&sort=score+desc%2C+metadata_modified+desc
date_of_transfer 2017-10-24
ddrad_data no
ddrad_dataset_ids NA
death_date unknown
description 10X Genomics- 102.100.100/52872 and102.100.100/52873 - processed
dna_conc_ng_ul unknown
dna_extracted_by Rahul Vivek Rane
dna_extraction_date 2016-06-09
dna_extraction_method Qiagen genomic tip 20G
dna_treatment >50kb size selection
exon_capture_data no
exon_capture_dataset_ids NA
experimental_design 10X Chromium, 2 lanes HiSeq 2500 Rapid (150bp PE)
facility_sample_id unknown
family Burramyidae
file 52873_HMCKTBBXX.tar
flow_id HMCKTBBXX
flowcell_id HMCKTBBXX
folder_name HMCKTBBXX.tar
genome_data yes
genome_dataset_ids 40139 | 52592 | 52593
genus Burramys
habitat Boulderfield
identified_by Andrew Weeks
institution_name University of Melbourne
latitude -37.151763
library_comments NA
library_index_id NA
library_index_sequence NA
library_location AGRF
library_ng_ul unknown
library_oligo_sequence NA
library_pcr_cycles NA
library_pcr_reps NA
library_prep_date
library_prep_method 10X Chromium
library_prepared_by unknown
library_status Sequenced
library_type genome linked read
life_stage adult organism
location_generalisation
location_text Federation, Mt Buller Alpine Resort
longitude 146.4353
n_libraries_pooled 1
omg_project Whole genomes
order Diprotodontia
phylum Chordata
prior_genetics unknown
sample_quality limited degradation
sample_submission_date 2017-10-24
sequence_length 150bp PE
sequencing_facility AGRF
sequencing_platform Illumina HiSeq 4000
sex female
software_version RTA 2.7.7
source_population Mt Buller
species parvus
species_name Burramys parvus
state_or_region Victoria
subspecies_or_variant southern evolutionarily significant unit
taxon_id 38600
taxonomic_group marsupial
ticket BPAOPS-371
tissue_collection Mammal
tissue_number 241.0
tissue_preservation frozen -80C
tissue_type tail
trace_lab no
type_status unknown
voucher_id
voucher_number no voucher
voucher_or_tissue_number 0241
wild_captive wild