JSON

OMG 10x Illumina Processed 102.100.100/40138 H5MY7DSXX

102.100.100/52873 Burramys parvus, 0241 Australia Victoria

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
access_rights temporary embargo
ala_species_name
ala_specimen_url NA
ancillary_notes NA
archive_ingestion_date 2018-08-21
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/10x_processed/BPAOPS-670/
birth_date 2010-02-01
bpa_dataset_id 102.100.100/52593
bpa_library_id 102.100.100/52873
bpa_sample_id 102.100.100/40138
bpa_work_order
class Mammalia
collection_date 2015-11-06
collection_method unknown
collector Dr Andrew Weeks
collector_sample_id 0241
common_name Mountain pygmy possum
conservation_sample no
conservation_status NA
contextual_data_submission_date
coord_uncertainty_metres 3.0
country Australia
custodian Dr Andrew Weeks
data_custodian Andrew Weeks
data_generated 2018-08-21
data_type Illumina FASTQ
dataset_url (ingested)
date_of_transfer 2018-08-13
death_date unknown
description 10X Genomics- 102.100.100/40136 and 102.100.100/40138-processed
dna_conc_ng_ul unknown
dna_extracted_by Rahul Vivek Rane
dna_extraction_date 2016-06-09
dna_extraction_method Qiagen genomic tip 20G
dna_treatment >50kb size selection
experimental_design 10X Chromium, 2 lanes HiSeq 2500 Rapid (150bp PE)
facility_sample_id AGRF
family Burramyidae
file AGRF_OMG_H5MY7DSXX_40138.tar.gz
flow_id H5MY7DSXX
flowcell_id H5MY7DSXX
folder_name 20180810_AGRF_BPA_OMG_H5MY7DSXX
genome_sample yes
genome_status Sequenced
genus Burramys
habitat Boulderfield
identified_by Dr Andrew Weeks
institution_name University of Melbourne
latitude 146.4353
library_comments NA
library_index_id NA
library_index_sequence NA
library_location AGRF
library_ng_ul unknown
library_oligo_sequence NA
library_pcr_cycles NA
library_pcr_reps NA
library_prep_date
library_prep_method 10X Chromium
library_prepared_by unknown
library_status Sequenced
library_type genome linked read
life_stage adult organism
location_generalisation
location_text Federation, Mt Buller Alpine Resort
longitude -37.151763
n_libraries_pooled 1.0
omg_project Whole genomes
order Diprotodontia
phylogenomic_sample no
phylogenomic_status NA
phylum Chordata
prior_genetics unknown
sample_quality limited degradation
sample_submission_date 2018-08-13
sequence_length 150 PE
sequencing_facility AGRF
sequencing_platform NovaSeq 6000
sex female
software_version mkfastq is 2.2.1
source_population Mt Buller
species parvus
species_name Burramys parvus
state_or_region Victoria
subspecies southern evolutionarily significant unit
taxon_id
taxonomic_group marsupial
ticket BPAOPS-670
tissue_collection Mammal
tissue_number 241.0
tissue_preservation -80C
tissue_type tail
trace_lab no
type_status
voucher_number no voucher
voucher_or_tissue_number 0241
wild_captive wild