OMG 10x Illumina Processed 102.100.100/40136 H5MY7DSXX

102.100.100/52872 Perameles gunnii, B50163 Australia Victoria

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
access_rights temporary embargo
ala_specimen_url NA
ancillary_notes This animal was bred in captivity (Melbourne Zoo) and released onto Churchill Island, where it was found deceased.
archive_ingestion_date 2018-08-21
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/omg_staging/10x_processed/BPAOPS-670/
birth_date 2015-01-19
bpa_dataset_id 102.100.100/52592
bpa_library_id 102.100.100/52872
bpa_sample_id 102.100.100/40136
class Mammalia
collection_date 2015-08-27
collection_method mortality
collector Dr Michael Lynch | Zoos Victoria
collector_sample_id 73589A4
common_name Eastern barred bandicoot
conservation_sample no
conservation_status NA
coord_uncertainty_metres unknown
country Australia
custodian Dr Andrew Weeks
data_custodian Andrew Weeks
data_generated 2018-08-21
data_type Illumina FASTQ
dataset_url (ingested)
date_of_transfer 2018-08-13
death_date 2015-08-27
description 10X Genomics- 102.100.100/40136 and 102.100.100/40138-processed
dna_conc_ng_ul unknown
dna_extracted_by Rahul Vivek Rane
dna_extraction_date 2016-06-01
dna_extraction_method Qiagen genomic tip 20G
dna_treatment >50kb size selection
experimental_design 10X Chromium, 2 lanes HiSeq 2500 Rapid (150bp PE)
facility_sample_id AGRF
family Peramelidae
file AGRF_OMG_H5MY7DSXX_40136.tar.gz
flow_id H5MY7DSXX
flowcell_id H5MY7DSXX
folder_name 20180810_AGRF_BPA_OMG_H5MY7DSXX
genome_sample yes
genome_status Sequenced
genus Perameles
habitat Grassy woodland
identified_by Dr Michael Lynch | Zoos Victoria
institution_name University of Melbourne
latitude 145.3345
library_comments NA
library_index_id NA
library_index_sequence NA
library_location AGRF
library_ng_ul unknown
library_oligo_sequence NA
library_pcr_cycles NA
library_pcr_reps NA
library_prep_method 10X Chromium
library_prepared_by AGRF
library_status Sequenced
library_type genome linked read
life_stage adult organism
location_text Churchill Island
longitude -38.500034
n_libraries_pooled 1.0
omg_project Whole genomes
order Peramelemorphia
phylogenomic_sample no
phylogenomic_status NA
phylum Chordata
prior_genetics unknown
sample_quality limited degradation
sample_submission_date 2018-08-13
sequence_length 150 PE
sequencing_facility AGRF
sequencing_platform NovaSeq 6000
sex female
software_version mkfastq is 2.2.1
source_population Hamilton
species gunnii
species_name Perameles gunnii
state_or_region Victoria
subspecies victorian
taxonomic_group marsupial
ticket BPAOPS-670
tissue_collection Mammal
tissue_number B50163
tissue_preservation ethanol | frozen
tissue_type ear biopsy
trace_lab no
voucher_number no voucher
voucher_or_tissue_number B50163
wild_captive captive