JSON

GAP PromethION, Refence genomes, 376316,

Phebalium stellatum I.Telford & J.J.Bruhl, Rutaceae, Rose Andrew | Ash Jones

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type ont-promethion
bait_set_name
bait_set_reference Not applicable
base_url https://downloads-qcif.bioplatforms.com/bpa/plants_staging/ont-promethion/BPAOPS-1069/
ccg_jira_ticket BPAOPS-1069
cell_postion 1H
country Australia
data_generated True
data_type Main dataset (Phase 2 ref genomes)
dataset_id 83682
date_data_published 25/5/2021
date_of_transfer 18/08/2021
date_of_transfer_to_archive 22/5/2021
description PromethION
dna_extract
dna_extract_pressed_sheet
download
facility BRF
family Rutaceae
flow_cell_id PAF32853
flow_cell_type FLO-PRO002
folder_name 20210419_GAP_BRF_PAF32853
genomic_material_associated_references In the protocol
genomic_material_preparation_date 2020-12-11
genomic_material_preparation_materials In the protocol
genomic_material_preparation_process https://www.protocols.io/view/scalable-high-molecular-weight-dna-extraction-for-bnjhmcj6
genomic_material_preparation_type Leaf gDNA
genomic_material_prepared_by Ashley Jones
herbarium_code NE
id_vetting_by Jeremy Bruhl
id_vetting_date 2019-03-09
insert_size_range 40Kb
library_construction_protocol SQK-LSK110
library_id 380527
living_collections_catalog_number UNE20201105
living_collections_event_date 2020-11-05
living_collections_material_sample_rna Not applicable
living_collections_record_number SD354
living_collections_recorded_by S. Dema, J.J.Bruhl & I.Telford
location_id
location_notes Wild Cattle Creek State Forest, N of Cascade, 2.3 km along Measuring Hut Road from junction with Moses Rock Road
nagoya_protocol_compliance Yes
nagoya_protocol_permit_number SL100305
nanopore_software_version MinKNOW 20.06.18 Guppy 4.0.11 Bream 6.0.10
population_group
preservation_date_begin 2020-11-05
preservation_temperature Leaf −4°C short-term UNE and postal (2020-11-05) |Leaf −80C long-term ANU (2020-11-17)| DNA 4°C (2020-12-11)
preservation_type Fridge
project_aim Refence genomes
sample_id 102.100.100/376316
sample_submission_date 2021-04-12
sample_submitter_email randre20@une.edu.au | ashley.jones@anu.edu.au
sample_submitter_name Rose Andrew | Ash Jones
scientific_name Phebalium stellatum
scientific_name_authorship I.Telford & J.J.Bruhl
scientific_name_notes NA
sequencer PromethION
silica_gel No
silica_gel_id
silica_gel_pressed_sheet
species_complex
state_or_territory NSW
ticket BPAOPS-1069
voucher_herbarium_catalog_number 109286
voucher_herbarium_collector_id S.Dema
voucher_herbarium_event_date 2019-09-03
voucher_herbarium_record_number S.Dema 354
voucher_herbarium_recorded_by Sangay Dema | Jeremy Bruhl | Ian Telford | University of New England