
GAP ONT MinION, Reference genome, 79639,
Data and Resources
Additional Info
Field | Value |
---|---|
Geospatial Coverage | |
Resource Permissions | organization_member |
bait_set_name | |
bait_set_reference | Not applicable |
base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/ont-minion/BPAOPS-887/ |
ccg_jira_ticket | BPAOPS-887 |
cell_postion | - |
data_generated | True |
data_type | Pilot |
dataset_id | 102.100.100/83647 |
date_of_transfer | 14/2/2020 |
date_of_transfer_to_archive | 14/2/2020 |
description | MinION |
dna_extract | Not applicable |
dna_extract_pressed_sheet | Not applicable |
download | https://data.bioplatforms.com/dataset/bpa-gap-ont-minion-79639 |
facility | AGRF |
family | Proteaceae |
file_count | |
flow_cell_type | MinION (R9.4.1) |
folder_name | 20200122_GAP_AGRF_FAL87718 |
genomic_material_associated_references | |
genomic_material_preparation_date | 2019-07-19 |
genomic_material_preparation_materials | |
genomic_material_preparation_process | Sorbitol Wash / CTAB extraction |
genomic_material_preparation_type | gDNA |
genomic_material_prepared_by | Patricia Lu-Irving | Samantha Yap |
herbarium_code | NSW |
id_vetting_by | Marlien van der Merwe | Herve Sauquet |
id_vetting_date | |
insert_size_range | >15 Kb |
library_construction_protocol | Ligation Sequencing Kit (SQK-LSK109) |
library_id | 81650 |
living_collections_catalog_number | Not yet assigned |
living_collections_event_date | |
living_collections_material_sample_rna | Not applicable |
living_collections_record_number | Not yet assigned |
living_collections_recorded_by | Not yet assigned |
nagoya_protocol_compliance | Yes |
nagoya_protocol_permit_number | SL100569 |
nanopore_software_version | MinKNOW version19.12.2, Guppy version 3.2.8 |
preservation_date_begin | 2019-05-30 |
preservation_temperature | Minus 80 (collected in liquid N) |
preservation_type | Freezing |
project_aim | Reference genome |
run_id | FAL87718 |
sample_id | 102.100.100/79639 |
sample_submission_date | |
sample_submitter_email | Jason.Bragg@rbgsyd.nsw.gov.au |
sample_submitter_name | Jason Bragg |
scientific_name | Telopea speciosissima |
scientific_name_authorship | (Sm.) R.Br. |
scientific_name_notes | |
sequencer | ONT MinION |
silica_gel | Not applicable |
silica_gel_id | Not applicable |
silica_gel_pressed_sheet | Not applicable |
ticket | BPAOPS-887 |
voucher_herbarium_catalog_number | |
voucher_herbarium_collector_id | Jason Bragg |
voucher_herbarium_event_date | |
voucher_herbarium_record_number | NSW1024214 |
voucher_herbarium_recorded_by |