JSON
GAP ONT MinION, Reference genome, 79638,
Data and Resources
Additional Info
| Field | Value |
|---|---|
| Geospatial Coverage | |
| Resource Permissions | organization_member |
| bait_set_name | |
| bait_set_reference | Not applicable |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/ont-minion/BPAOPS-847/ |
| ccg_jira_ticket | BPAOPS-847 |
| cell_postion | MN17324 |
| data_generated | True |
| data_type | Pilot |
| dataset_id | 102.100.100/83642 |
| date_of_transfer | 22/08/2019 |
| date_of_transfer_to_archive | 23/08/2019 |
| description | MinION |
| dna_extract | No |
| dna_extract_pressed_sheet | No |
| download | https://data.bioplatforms.com/dataset/bpa-gap-ont-minion-79638 |
| facility | AGRF |
| family | Fabaceae |
| file_count | |
| flow_cell_type | MinION (R9.4.1) |
| folder_name | 20190822_GAP_AGRF_FAK90583 |
| genomic_material_associated_references | Acacia DNA extraction protocol on GAP website |
| genomic_material_preparation_date | 2019-07-03 |
| genomic_material_preparation_materials | STE:CTAB/chloroform; isopropanol :NaAC precipitation |
| genomic_material_preparation_process | STE:CTAB/chloroform; isopropanol :NaAC precipitation |
| genomic_material_preparation_type | gDNA |
| genomic_material_prepared_by | Todd McLay |
| herbarium_code | CANB |
| id_vetting_by | |
| id_vetting_date | |
| insert_size_range | >15 Kb |
| library_construction_protocol | Ligation Sequencing Kit (SQK-LSK109) |
| library_id | 81645 |
| living_collections_catalog_number | CANB 748486 |
| living_collections_event_date | 2019-05-01 |
| living_collections_material_sample_rna | Not applicable |
| living_collections_record_number | TM304 |
| living_collections_recorded_by | Todd McLay |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | DNP Reference 2018/19-8 |
| nanopore_software_version | MinKNOW: 19.06.8, Guppy: 3.0.4 |
| preservation_date_begin | 2019-07-03 |
| preservation_temperature | ambient |
| preservation_type | Silica, frozen |
| project_aim | Reference genome |
| run_id | FAK90583 |
| sample_id | 102.100.100/79638 |
| sample_submission_date | 2019-05-17 |
| sample_submitter_email | Daniel.Murphy@rbg.vic.gov.au |
| sample_submitter_name | Daniel Murphy | Acacia Genome Consortium |
| scientific_name | Acacia pycnantha |
| scientific_name_authorship | Benth. |
| scientific_name_notes | |
| sequencer | ONT MinION |
| silica_gel | No |
| silica_gel_id | Not applicable |
| silica_gel_pressed_sheet | No |
| ticket | BPAOPS-847 |
| voucher_herbarium_catalog_number | CANB 748486 |
| voucher_herbarium_collector_id | S.R. Donaldson |
| voucher_herbarium_event_date | 2007-10-12 |
| voucher_herbarium_record_number | S.R. Donaldson 3550 |
| voucher_herbarium_recorded_by | S.R. Donaldson |