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GAP Illumina short read, Phylogenomics, 81227, Angiosperms353 bait kit (Dataset 1)

Tasmannia insipida DC., Winteraceae, Hervé Sauquet | NSW-NE

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type
analysissoftwareversion NovaSeq Control Software (NCS) v1.7.0 and Real Time Analysis (RTA) v3.4.4, bcl2fastq 2.20.0.422
bait_set_name Angiosperms353 bait kit (Dataset 1)
bait_set_reference 10.1093/sysbio/syy086
base_url https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-983/20201116_GAP_AGRF_CAGRF20083581_HVM7GDRXX/
ccg_jira_ticket BPAOPS-983
country
data_generated True
data_type Main dataset
dataset_id 83655
date_data_published
date_of_transfer 18/11/2020
date_of_transfer_to_archive 19/11/2020
description Illumina Short Read
dna_extract No - Plant Material sent to AGRF for DNA extraction
dna_extract_pressed_sheet
download
facility AGRF
family Winteraceae
flow_cell_id HVM7GDRXX
folder_name 20201116_GAP_AGRF_CAGRF20083581_HVM7GDRXX
genomic_material_associated_references
genomic_material_preparation_date
genomic_material_preparation_materials
genomic_material_preparation_process Qiagen DNeasy 96 Plant Kit
genomic_material_preparation_type gDNA
genomic_material_prepared_by AGRF (Sep-Oct 2020)
herbarium_code NSW
id_vetting_by N.M. Thomas
id_vetting_date 2014-05-09
library_construction_protocol NEBNext Ultra II DNA with MyBaits Angio353 Capture
library_id 83433
living_collections_catalog_number
living_collections_event_date
living_collections_material_sample_rna
living_collections_record_number
living_collections_recorded_by
location_id
location_notes
nagoya_protocol_compliance Yes
nagoya_protocol_permit_number SL100569
population_group
preservation_date_begin
preservation_temperature
preservation_type
project_aim Phylogenomics
run_format 100PE
sample_id 102.100.100/81227
sample_submission_date 2020-09-16
sample_submitter_email herve.sauquet@gmail.com
sample_submitter_name Hervé Sauquet | NSW-NE
scientific_name Tasmannia insipida
scientific_name_authorship DC.
scientific_name_notes
sequencer NovaSeq 6000
silica_gel
silica_gel_id
silica_gel_pressed_sheet
species_complex
state_or_territory
ticket BPAOPS-983
voucher_herbarium_catalog_number NSW903620
voucher_herbarium_collector_id Nanette M. Thomas
voucher_herbarium_event_date 2014-05-09
voucher_herbarium_record_number N.M. Thomas 66
voucher_herbarium_recorded_by NSW