GAP Illumina short read, Phylogenomics, 81215, Angiosperms353 bait kit (Dataset 2)

Sphenotoma gracilis (R.Br.) Sweet, Ericaceae, Kelly Shepherd

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type illumina-shortread
analysissoftwareversion NovaSeq Control Software (NCS) v1.7.0 and Real Time Analysis (RTA) v3.4.4, bcl2fastq 2.20.0.422
bait_set_name Angiosperms353 bait kit (Dataset 2)
bait_set_reference 10.1093/sysbio/syy086
base_url https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-1028/20210211_GAP_AGRF_CAGRF21025256_HY7KVDRXX/
ccg_jira_ticket BPAOPS-1028
country
data_generated True
data_type Main dataset (AATOL Stage 1)
dataset_id 83675
date_data_published
date_of_transfer 11/02/2021
date_of_transfer_to_archive 5/3/2021
description Illumina Short Read
dna_extract Yes
dna_extract_pressed_sheet Yes
download
facility AGRF
family Ericaceae
flow_cell_id HY7KVDRXX
folder_name 20210211_GAP_ AGRF_CAGRF21025256_HY7KVDRXX
genomic_material_associated_references
genomic_material_preparation_date 2020-07-06
genomic_material_preparation_materials
genomic_material_preparation_process Qiagen DNeasy plant mini kit
genomic_material_preparation_type gDNA
genomic_material_prepared_by Bronwyn MacDonald
herbarium_code PERTH
id_vetting_by Meissner, R.
id_vetting_date 2013-11-05
library_construction_protocol NEBNext Ultra II DNA with MyBaits Angio353 Capture
library_id 83421
living_collections_catalog_number
living_collections_event_date
living_collections_material_sample_rna
living_collections_record_number
living_collections_recorded_by
location_id
location_notes
nagoya_protocol_compliance Pre-Nagoya
nagoya_protocol_permit_number
population_group
preservation_date_begin
preservation_temperature
preservation_type
project_aim Phylogenomics
run_format 150PE
sample_id 102.100.100/81215
sample_submission_date 2020-08-06
sample_submitter_email kelly.shepherd@dbca.wa.gov.au
sample_submitter_name Kelly Shepherd
scientific_name Sphenotoma gracilis
scientific_name_authorship (R.Br.) Sweet
scientific_name_notes
sequencer NovaSeq 6000
silica_gel no
silica_gel_id
silica_gel_pressed_sheet
species_complex
state_or_territory
ticket BPAOPS-1028
voucher_herbarium_catalog_number 8963177
voucher_herbarium_collector_id Meissner, R.| McCormack, C.| Langley, M.
voucher_herbarium_event_date 2013-11-05
voucher_herbarium_record_number 5013
voucher_herbarium_recorded_by