JSON

GAP Illumina short read, Phylogenomics, 81211, Angiosperms353 bait kit (Dataset 1)

Anticoryne ovalifolia (F.Muell.) Rye, Myrtaceae, Kelly Shepherd

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type
analysissoftwareversion NovaSeq Control Software (NCS) v1.7.0 and Real Time Analysis (RTA) v3.4.4, bcl2fastq 2.20.0.422
bait_set_name Angiosperms353 bait kit (Dataset 1)
bait_set_reference 10.1093/sysbio/syy086
base_url https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-984/20201116_GAP_AGRF_CAGRF20083582_HVM7GDRXX/
ccg_jira_ticket BPAOPS-984
country
data_generated True
data_type Main dataset
dataset_id 83653
date_data_published
date_of_transfer 18/11/2020
date_of_transfer_to_archive 19/11/2020
description Illumina Short Read
dna_extract Yes
dna_extract_pressed_sheet Yes
download
facility AGRF
family Myrtaceae
flow_cell_id HVM7GDRXX
folder_name 20201116_GAP_AGRF_CAGRF20083582_HVM7GDRXX
genomic_material_associated_references
genomic_material_preparation_date 2020-07-06
genomic_material_preparation_materials
genomic_material_preparation_process Qiagen DNeasy plant mini kit
genomic_material_preparation_type gDNA
genomic_material_prepared_by Bronwyn MacDonald
herbarium_code PERTH
id_vetting_by Cochrane, J.A
id_vetting_date 2017-12-15
library_construction_protocol NEBNext Ultra II DNA with MyBaits Angio353 Capture
library_id 83417
living_collections_catalog_number
living_collections_event_date
living_collections_material_sample_rna
living_collections_record_number
living_collections_recorded_by
location_id
location_notes
nagoya_protocol_compliance yes
nagoya_protocol_permit_number withheld
population_group
preservation_date_begin
preservation_temperature
preservation_type
project_aim Phylogenomics
run_format 100PE
sample_id 102.100.100/81211
sample_submission_date 2020-08-06
sample_submitter_email kelly.shepherd@dbca.wa.gov.au
sample_submitter_name Kelly Shepherd
scientific_name Anticoryne ovalifolia
scientific_name_authorship (F.Muell.) Rye
scientific_name_notes
sequencer NovaSeq 6000
silica_gel No
silica_gel_id
silica_gel_pressed_sheet
species_complex
state_or_territory
ticket BPAOPS-984
voucher_herbarium_catalog_number 8991758
voucher_herbarium_collector_id Cochrane, J.A
voucher_herbarium_event_date 2017-12-15
voucher_herbarium_record_number JAC 8396
voucher_herbarium_recorded_by