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GAP Illumina short read, Phylogenomics, 81207, Angiosperms-353

Stachystemon virgatus (Klotzsch) Halford & R.J.F.Hend., Euphorbiaceae, Kelly Shepherd

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
analysissoftwareversion NovaSeq Control Software (NCS) v1.7.0 and Real Time Analysis (RTA) v3.4.4, bcl2fastq 2.20.0.422
bait_set_name Angiosperms-353
bait_set_reference 10.1093/sysbio/syy086
base_url https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-984/20201116_GAP_AGRF_CAGRF20083582_HVM7GDRXX/
ccg_jira_ticket BPAOPS-984
data_generated True
data_type Main dataset
dataset_id 102.100.100/83653
date_of_transfer 18/11/20
date_of_transfer_to_archive 19/11/2020
description Illumina Short Read
dna_extract Yes
dna_extract_pressed_sheet Yes
download
facility AGRF
family Euphorbiaceae
file_count
flow_cell_id HVM7GDRXX
folder_name 20201116_GAP_AGRF_CAGRF20083582_HVM7GDRXX
genomic_material_associated_references
genomic_material_preparation_date 2020-07-06
genomic_material_preparation_materials
genomic_material_preparation_process Qiagen DNeasy plant mini kit
genomic_material_preparation_type gDNA
genomic_material_prepared_by Bronwyn MacDonald
herbarium_code PERTH
id_vetting_by Davis, R.
id_vetting_date 2013-09-29
library_construction_protocol NEBNext Ultra II DNA with MyBaits Angio353 Capture
library_id 83413
living_collections_catalog_number
living_collections_event_date
living_collections_material_sample_rna
living_collections_record_number
living_collections_recorded_by
nagoya_protocol_compliance pre nagoya
nagoya_protocol_permit_number
preservation_date_begin
preservation_temperature
preservation_type
project_aim Phylogenomics
sample_id 102.100.100/81207
sample_submission_date 2020-08-06
sample_submitter_email kelly.shepherd@dbca.wa.gov.au
sample_submitter_name Kelly Shepherd
scientific_name Stachystemon virgatus
scientific_name_authorship (Klotzsch) Halford & R.J.F.Hend.
scientific_name_notes
sequencer NovaSeq 6000
silica_gel No
silica_gel_id
silica_gel_pressed_sheet
ticket BPAOPS-984
voucher_herbarium_catalog_number 8513821.0
voucher_herbarium_collector_id Davis, R.
voucher_herbarium_event_date 2013-09-29
voucher_herbarium_record_number 12358.0
voucher_herbarium_recorded_by