GAP Illumina short read, Phylogenomics, 79713, Angiosperms353 bait kit

Romnalda strobilacea R.J.F.Hend. & Sharpe, Asparagaceae, Bee Gunn | Joanne L. Birch

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type illumina-shortread
analysissoftwareversion NovaSeq Control Software (NCS) v1.7.0 and Real Time Analysis (RTA) v3.4.4, bcl2fastq 2.20.0.422
bait_set_name Angiosperms353 bait kit
bait_set_reference 10.1093/sysbio/syy086
base_url https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-1101/20210630_GAP_AGRF_CAGRF21025255_HFVFMDRXY/
ccg_jira_ticket BPAOPS-1101
country
data_generated True
data_type Main dataset (AATOL Stage 1)
dataset_id 83656
date_data_published 2/7/21
date_of_transfer 1/7/2021
date_of_transfer_to_archive 1/7/2021
description Illumina Short Read
dna_extract Yes
dna_extract_pressed_sheet no
download https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1101
facility AGRF
family Asparagaceae
flow_cell_id HFVFMDRXY
folder_name 20210630_GAP_AGRF_CAGRF21025255_HFVFMDRXY
genomic_material_associated_references Nil
genomic_material_preparation_date 2018-04-18
genomic_material_preparation_materials Qiagen DNeasy Plant Mini Kit, custom library preparation protocol, custom adapters/barcodes
genomic_material_preparation_process QIAGEN DNA extraction, mechanical DNA shearing, custom adapter ligation, custom barcode ligation
genomic_material_preparation_type gDNA, whole genome shotgun sequencing
genomic_material_prepared_by Bee Gunn | Royal Botanic Garden Melbourne
herbarium_code MEL
id_vetting_by Dr Joanne L. Birch
id_vetting_date
library_construction_protocol Unknown Library Prep with MyBaits Angiosperm 353 Capture
library_id 83411
living_collections_catalog_number
living_collections_event_date
living_collections_material_sample_rna
living_collections_record_number
living_collections_recorded_by not applicable
location_id
location_notes
nagoya_protocol_compliance Yes
nagoya_protocol_permit_number Private land
population_group
preservation_date_begin
preservation_temperature
preservation_type
project_aim Phylogenomics
run_format 150PE
sample_id 102.100.100/79713
sample_submission_date 2021-05-14
sample_submitter_email bee.gunn@rbg.vic.gov.au | joanne.birch@unimelb.edu.au
sample_submitter_name Bee Gunn | Joanne L. Birch
scientific_name Romnalda strobilacea
scientific_name_authorship R.J.F.Hend. & Sharpe
scientific_name_notes
sequencer NovaSeq 6000
silica_gel no
silica_gel_id
silica_gel_pressed_sheet no
species_complex
state_or_territory
ticket BPAOPS-1101
voucher_herbarium_catalog_number MEL 2495048A
voucher_herbarium_collector_id Birch, J.L.
voucher_herbarium_event_date 2017-12-15
voucher_herbarium_record_number 925
voucher_herbarium_recorded_by Bee Gunn