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GAP Illumina short read, Phylogenomics, 80876, Angiosperms-353 bait kit
Data and Resources
Additional Info
| Field | Value |
|---|---|
| Geospatial Coverage | |
| Resource Permissions | organization_member |
| analysissoftwareversion | NovaSeq Control Software (NCS) v1.7.0 and Real Time Analysis (RTA) v3.4.4, bcl2fastq 2.20.0.422 |
| bait_set_name | Angiosperms-353 bait kit |
| bait_set_reference | 10.1093/sysbio/syy086 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-984/20201116_GAP_AGRF_CAGRF20083582_HVM7GDRXX/ |
| ccg_jira_ticket | BPAOPS-984 |
| data_generated | True |
| data_type | Main dataset |
| dataset_id | 102.100.100/83653 |
| date_of_transfer | 18/11/20 |
| date_of_transfer_to_archive | 19/11/2020 |
| description | Illumina Short Read |
| dna_extract | No - Plant Material sent to AGRF for DNA extraction |
| dna_extract_pressed_sheet | |
| download | |
| facility | AGRF |
| family | Plantaginaceae |
| file_count | |
| flow_cell_id | HVM7GDRXX |
| folder_name | 20201116_GAP_AGRF_CAGRF20083582_HVM7GDRXX |
| genomic_material_associated_references | |
| genomic_material_preparation_date | |
| genomic_material_preparation_materials | |
| genomic_material_preparation_process | Qiagen DNeasy 96 Plant Kit |
| genomic_material_preparation_type | gDNA |
| genomic_material_prepared_by | AGRF (Aug-Sep 2020) |
| herbarium_code | AD |
| id_vetting_by | |
| id_vetting_date | 2000-01-01 |
| library_construction_protocol | NEBNext Ultra II DNA with MyBaits Angio353 Capture |
| library_id | 83067 |
| living_collections_catalog_number | |
| living_collections_event_date | |
| living_collections_material_sample_rna | |
| living_collections_record_number | |
| living_collections_recorded_by | |
| nagoya_protocol_compliance | pre nagoya |
| nagoya_protocol_permit_number | N/A |
| preservation_date_begin | |
| preservation_temperature | |
| preservation_type | |
| project_aim | Phylogenomics |
| run_format | 100PE |
| sample_id | 102.100.100/80876 |
| sample_submission_date | 2020-08-27 |
| sample_submitter_email | michelle.waycott@sa.gov.au |
| sample_submitter_name | Michelle Waycott |
| scientific_name | Veronica decorosa |
| scientific_name_authorship | F.Muell. |
| scientific_name_notes | |
| sequencer | NovaSeq 6000 |
| silica_gel | No |
| silica_gel_id | |
| silica_gel_pressed_sheet | |
| ticket | BPAOPS-984 |
| voucher_herbarium_catalog_number | AD133892 |
| voucher_herbarium_collector_id | W.R. Telfer | C. Oats |
| voucher_herbarium_event_date | 1999-11-24 |
| voucher_herbarium_record_number | BS104-4840 |
| voucher_herbarium_recorded_by | W.R. Telfer | C. Oats |