GAP Illumina short read, Phylogenomics, 80684, Angiosperms353 bait kit

Stephania bancroftii F.M.Bailey, Menispermaceae, Daniel Murphy

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type illumina-shortread
analysissoftwareversion NovaSeq Control Software (NCS) v1.7.0 and Real Time Analysis (RTA) v3.4.4, bcl2fastq 2.20.0.422
bait_set_name Angiosperms353 bait kit
bait_set_reference 10.1093/sysbio/syy086
base_url https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-1102/20210630_GAP_AGRF_CAGRF20052378_HFVFMDRXY/
ccg_jira_ticket BPAOPS-1102
country
data_generated True
data_type Main dataset (AATOL Stage 1)
dataset_id 83656
date_data_published 2/7/21
date_of_transfer 1/7/2021
date_of_transfer_to_archive 1/7/2021
description Illumina Short Read
dna_extract Yes
dna_extract_pressed_sheet Yes
download https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1102
facility AGRF
family Menispermaceae
flow_cell_id HFVFMDRXY
folder_name 20210630_GAP_AGRF_CAGRF20052378_HFVFMDRXY
genomic_material_associated_references
genomic_material_preparation_date 2021-02-01
genomic_material_preparation_materials
genomic_material_preparation_process D-sorbitol pre-wash and Qiagen DNeasy Plant Mini Kit
genomic_material_preparation_type gDNA
genomic_material_prepared_by Gareth Holmes | Royal Botanic Gardens Victoria
herbarium_code QRS
id_vetting_by Hyland, B.
id_vetting_date 2001-05-10
library_construction_protocol NEBNext Ultra II DNA with MyBaits Angiosperm 353 Capture
library_id 82875
living_collections_catalog_number
living_collections_event_date
living_collections_material_sample_rna
living_collections_record_number
living_collections_recorded_by
location_id
location_notes
nagoya_protocol_compliance Pre-Nagoya
nagoya_protocol_permit_number
population_group
preservation_date_begin
preservation_temperature
preservation_type
project_aim Phylogenomics
run_format 150PE
sample_id 102.100.100/80684
sample_submission_date 2021-05-14
sample_submitter_email daniel.murphy@rbg.vic.gov.au
sample_submitter_name Daniel Murphy
scientific_name Stephania bancroftii
scientific_name_authorship F.M.Bailey
scientific_name_notes
sequencer NovaSeq 6000
silica_gel no
silica_gel_id
silica_gel_pressed_sheet
species_complex
state_or_territory
ticket BPAOPS-1102
voucher_herbarium_catalog_number QRS 121104
voucher_herbarium_collector_id Ford, A.
voucher_herbarium_event_date 2000-11-17
voucher_herbarium_record_number Ford, A. 2472
voucher_herbarium_recorded_by A. Ford