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GAP Illumina short read, Reference genome, 79638,

Acacia pycnantha Benth., Fabaceae, Daniel Murphy | Acacia Genome Consortium

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
analysissoftwareversion Illumina RTA v3.4.4, Illumina bcl2fastq v2.20.0.422
bait_set_name
bait_set_reference Not applicable
base_url https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-947/20200806_GAP_NGS_AGRF_HNMVTDRXX/
ccg_jira_ticket BPAOPS-947
data_generated True
data_type Pilot
dataset_id 102.100.100/83652
date_of_transfer 06/08/2020
date_of_transfer_to_archive 11/08/2020
description Illumina Short Read
dna_extract No
dna_extract_pressed_sheet No
download https://data.bioplatforms.com/dataset/bpa-gap-illumina-shortread-81996
facility AGRF
family Fabaceae
file_count
flow_cell_id HNMVTDRXX
folder_name 20200806_GAP_NGS_AGRF_HNMVTDRXX
genomic_material_associated_references Acacia RNA extraction protocol on GAP website
genomic_material_preparation_date 2020-05-15
genomic_material_preparation_materials D-sorbitol buffer; 2-mercaptoethanol; Takara Fruit-Mate additive; Macherey & Nagel Plant and Fungi Kit; DNase I; NEB Monarch RNA purification kit.
genomic_material_preparation_process D-sorbitol prewash with a modified Machery & Nagel Plant and Fungi kit protocol
genomic_material_preparation_type Total RNA
genomic_material_prepared_by Gareth Holmes
herbarium_code CANB
id_vetting_by
id_vetting_date
library_construction_protocol TruSeq Strandard mRNA
library_id 81995
living_collections_catalog_number CANB 748486
living_collections_event_date 2019-05-01
living_collections_material_sample_rna Fruit
living_collections_record_number TM304
living_collections_recorded_by Todd McLay
nagoya_protocol_compliance Yes
nagoya_protocol_permit_number DNP Reference 2018/19-8
preservation_date_begin 2019-08-20
preservation_temperature - 20°C
preservation_type RNAlater
project_aim Reference genome
sample_id 102.100.100/79638
sample_submission_date 2020-05-15
sample_submitter_email Daniel.Murphy@rbg.vic.gov.au
sample_submitter_name Daniel Murphy | Acacia Genome Consortium
scientific_name Acacia pycnantha
scientific_name_authorship Benth.
scientific_name_notes
sequencer NovaSeq 6000
silica_gel No
silica_gel_id Not applicable
silica_gel_pressed_sheet No
ticket BPAOPS-947
voucher_herbarium_catalog_number CANB 748486
voucher_herbarium_collector_id S.R. Donaldson
voucher_herbarium_event_date 2007-10-12
voucher_herbarium_record_number S.R. Donaldson 3550
voucher_herbarium_recorded_by S.R. Donaldson