JSON

GAP Illumina short read, Phylogenomics, 79804, Angiosperms-353+Duplicate - Angiosperms-353 bait kits

Piper novae-hollandiae (Accepted name in APC: Piper hederaceum (Miq.) C.DC.) Miq., Piperaceae, Kor-jent van Dijk | Michelle Waycott | University of Adelaide

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
analysissoftwareversion Illumina RTA v2.11.3, Illumina bcl2fastq v2.20.0.422
bait_set_name Angiosperms-353+Duplicate - Angiosperms-353 bait kits
bait_set_reference 10.1093/sysbio/syy086
base_url https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-952/20200909_GAP_AGRF_HF7CKAFX2/
ccg_jira_ticket BPAOPS-952
data_generated True
data_type Pilot
dataset_id 102.100.100/83650
date_of_transfer 11/9/2020
date_of_transfer_to_archive 15/09/2020
description Illumina Short Read
dna_extract Yes
dna_extract_pressed_sheet Yes
download
facility AGRF / Kor-jent van Dijk
family Piperaceae
file_count
flow_cell_id HF7CKAFX2
folder_name 20200909_GAP_AGRF_HF7CKAFX2 (Angio353 - Korjent data only, plus combined bait)
genomic_material_associated_references Nil
genomic_material_preparation_date 2019-10-21
genomic_material_preparation_materials custom library preparation protocol, custom adapters/barcodes
genomic_material_preparation_process LGC sbeadex oKtopure
genomic_material_preparation_type gDNA, whole genome shotgun sequencing
genomic_material_prepared_by Kor-jent van Dijk
herbarium_code AD
id_vetting_by Not known
id_vetting_date
library_construction_protocol LGC sbeadex oKtopure, Angio353+Waycott MyBaits
library_id 81992
living_collections_catalog_number Not applicable
living_collections_event_date
living_collections_material_sample_rna
living_collections_record_number Not applicable
living_collections_recorded_by Not applicable
nagoya_protocol_compliance Pre-Nagoya
nagoya_protocol_permit_number
preservation_date_begin
preservation_temperature -20 °C
preservation_type DNA
project_aim Phylogenomics
sample_id 102.100.100/79804
sample_submission_date
sample_submitter_email korjent.vandijk@adelaide.edu.au
sample_submitter_name Kor-jent van Dijk | Michelle Waycott | University of Adelaide
scientific_name Piper novae-hollandiae (Accepted name in APC: Piper hederaceum (Miq.) C.DC.)
scientific_name_authorship Miq.
scientific_name_notes
sequencer NextSeq 500
silica_gel No
silica_gel_id
silica_gel_pressed_sheet
ticket BPAOPS-952
voucher_herbarium_catalog_number G890616
voucher_herbarium_collector_id Ed Biffin
voucher_herbarium_event_date
voucher_herbarium_record_number
voucher_herbarium_recorded_by