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GAP Illumina short read, Phylogenomics, 79780, Angiosperms-353 bait kit
Data and Resources
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79780_LibID81877_HF7CKAFX2_AGTGT ... Access denied FASTQ
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79780_LibID81877_HF7CKAFX2_AGTGT ... Access denied FASTQ
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79780_LibID81877_HF7CKAFX2_AGTGT ... Access denied FASTQ
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79780_LibID81877_HF7CKAFX2_AGTGT ... Access denied FASTQ
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79780_LibID81877_HF7CKAFX2_AGTGT ... Access denied FASTQ
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79780_LibID81877_HF7CKAFX2_AGTGT ... Access denied FASTQ
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79780_LibID81877_HF7CKAFX2_AGTGT ... Access denied FASTQ
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79780_LibID81877_HF7CKAFX2_AGTGT ... Access denied FASTQ
Additional Info
| Field | Value |
|---|---|
| Geospatial Coverage | |
| Resource Permissions | organization_member |
| analysissoftwareversion | Illumina RTA v2.11.3, Illumina bcl2fastq v2.20.0.422 |
| bait_set_name | Angiosperms-353 bait kit |
| bait_set_reference | 10.1093/sysbio/syy086 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-952/20200909_GAP_AGRF_HF7CKAFX2/ |
| ccg_jira_ticket | BPAOPS-952 |
| data_generated | True |
| data_type | Pilot |
| dataset_id | 102.100.100/83650 |
| date_of_transfer | 11/9/2020 |
| date_of_transfer_to_archive | 15/09/2020 |
| description | Illumina Short Read |
| dna_extract | Yes |
| dna_extract_pressed_sheet | Yes |
| download | |
| facility | AGRF / Kor-jent van Dijk |
| family | Ceratophyllaceae |
| file_count | |
| flow_cell_id | HF7CKAFX2 |
| folder_name | 20200909_GAP_AGRF_HF7CKAFX2 (Angio353 - Korjent data only, plus combined bait) |
| genomic_material_associated_references | Nil |
| genomic_material_preparation_date | 2019-10-21 |
| genomic_material_preparation_materials | custom library preparation protocol, custom adapters/barcodes |
| genomic_material_preparation_process | LGC sbeadex oKtopure |
| genomic_material_preparation_type | gDNA, whole genome shotgun sequencing |
| genomic_material_prepared_by | Kor-jent van Dijk |
| herbarium_code | AD |
| id_vetting_by | John Conran | University of Adelaide |
| id_vetting_date | |
| library_construction_protocol | LGC sbeadex oKtopure, Angio353 MyBaits |
| library_id | 81877 |
| living_collections_catalog_number | Not applicable |
| living_collections_event_date | |
| living_collections_material_sample_rna | |
| living_collections_record_number | Not applicable |
| living_collections_recorded_by | Not applicable |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | W23223-15 |
| preservation_date_begin | |
| preservation_temperature | -20 °C |
| preservation_type | DNA |
| project_aim | Phylogenomics |
| run_format | |
| sample_id | 102.100.100/79780 |
| sample_submission_date | |
| sample_submitter_email | korjent.vandijk@adelaide.edu.au |
| sample_submitter_name | Kor-jent van Dijk | Michelle Waycott | University of Adelaide |
| scientific_name | Ceratophyllum demersum |
| scientific_name_authorship | L. |
| scientific_name_notes | |
| sequencer | NextSeq 500 |
| silica_gel | No |
| silica_gel_id | |
| silica_gel_pressed_sheet | |
| ticket | BPAOPS-952 |
| voucher_herbarium_catalog_number | AD pending |
| voucher_herbarium_collector_id | John Conran |
| voucher_herbarium_event_date | |
| voucher_herbarium_record_number | |
| voucher_herbarium_recorded_by |