
GAP Illumina short read, Phylogenomics, 79780, Angiosperms-353 bait kit
Data and Resources
-
79780_LibID81877_HF7CKAFX2_AGTGT ... Access denied FASTQ
-
79780_LibID81877_HF7CKAFX2_AGTGT ... Access denied FASTQ
-
79780_LibID81877_HF7CKAFX2_AGTGT ... Access denied FASTQ
-
79780_LibID81877_HF7CKAFX2_AGTGT ... Access denied FASTQ
-
79780_LibID81877_HF7CKAFX2_AGTGT ... Access denied FASTQ
-
79780_LibID81877_HF7CKAFX2_AGTGT ... Access denied FASTQ
-
79780_LibID81877_HF7CKAFX2_AGTGT ... Access denied FASTQ
-
79780_LibID81877_HF7CKAFX2_AGTGT ... Access denied FASTQ
Additional Info
Field | Value |
---|---|
Geospatial Coverage | |
Resource Permissions | organization_member |
analysissoftwareversion | Illumina RTA v2.11.3, Illumina bcl2fastq v2.20.0.422 |
bait_set_name | Angiosperms-353 bait kit |
bait_set_reference | 10.1093/sysbio/syy086 |
base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-952/20200909_GAP_AGRF_HF7CKAFX2/ |
ccg_jira_ticket | BPAOPS-952 |
data_generated | True |
data_type | Pilot |
dataset_id | 102.100.100/83650 |
date_of_transfer | 11/9/2020 |
date_of_transfer_to_archive | 15/09/2020 |
description | Illumina Short Read |
dna_extract | Yes |
dna_extract_pressed_sheet | Yes |
download | |
facility | AGRF / Kor-jent van Dijk |
family | Ceratophyllaceae |
file_count | |
flow_cell_id | HF7CKAFX2 |
folder_name | 20200909_GAP_AGRF_HF7CKAFX2 (Angio353 - Korjent data only, plus combined bait) |
genomic_material_associated_references | Nil |
genomic_material_preparation_date | 2019-10-21 |
genomic_material_preparation_materials | custom library preparation protocol, custom adapters/barcodes |
genomic_material_preparation_process | LGC sbeadex oKtopure |
genomic_material_preparation_type | gDNA, whole genome shotgun sequencing |
genomic_material_prepared_by | Kor-jent van Dijk |
herbarium_code | AD |
id_vetting_by | John Conran | University of Adelaide |
id_vetting_date | |
library_construction_protocol | LGC sbeadex oKtopure, Angio353 MyBaits |
library_id | 81877 |
living_collections_catalog_number | Not applicable |
living_collections_event_date | |
living_collections_material_sample_rna | |
living_collections_record_number | Not applicable |
living_collections_recorded_by | Not applicable |
nagoya_protocol_compliance | Yes |
nagoya_protocol_permit_number | W23223-15 |
preservation_date_begin | |
preservation_temperature | -20 °C |
preservation_type | DNA |
project_aim | Phylogenomics |
run_format | |
sample_id | 102.100.100/79780 |
sample_submission_date | |
sample_submitter_email | korjent.vandijk@adelaide.edu.au |
sample_submitter_name | Kor-jent van Dijk | Michelle Waycott | University of Adelaide |
scientific_name | Ceratophyllum demersum |
scientific_name_authorship | L. |
scientific_name_notes | |
sequencer | NextSeq 500 |
silica_gel | No |
silica_gel_id | |
silica_gel_pressed_sheet | |
ticket | BPAOPS-952 |
voucher_herbarium_catalog_number | AD pending |
voucher_herbarium_collector_id | John Conran |
voucher_herbarium_event_date | |
voucher_herbarium_record_number | |
voucher_herbarium_recorded_by |