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GAP Illumina short read, Reference genome, 79638,

Acacia pycnantha Benth., Fabaceae, Daniel Murphy | Acacia Genome Consortium

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
analysissoftwareversion Illumina RTA v3.4.4, Illumina bcl2fastq v2.20.0.422
bait_set_name
bait_set_reference Not applicable
base_url https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-828/
ccg_jira_ticket BPAOPS-828
data_generated True
data_type Pilot
dataset_id 102.100.100/83641
date_of_transfer 28/06/2019
date_of_transfer_to_archive 10/07/2019
description Illumina Short Read
dna_extract No
dna_extract_pressed_sheet No
download https://data.bioplatforms.com/dataset/bpa-gap-illumina-shortread-79638
facility AGRF
family Fabaceae
file_count
flow_cell_id HLCH5DSXX
folder_name 20190628_GAP_AGRF_HLCH5DSXX
genomic_material_associated_references Acacia DNA extraction protocol on GAP website
genomic_material_preparation_date 2019-05-01
genomic_material_preparation_materials STE:CTAB/chloroform; isopropanol :NaAC precipitation
genomic_material_preparation_process STE:CTAB/chloroform; isopropanol :NaAC precipitation
genomic_material_preparation_type gDNA
genomic_material_prepared_by Todd McLay
herbarium_code CANB
id_vetting_by
id_vetting_date
library_construction_protocol TruSeq Nano DNA
library_id 81644
living_collections_catalog_number CANB 748486
living_collections_event_date 2019-05-01
living_collections_material_sample_rna Not applicable
living_collections_record_number TM304
living_collections_recorded_by Todd McLay
nagoya_protocol_compliance Yes
nagoya_protocol_permit_number DNP Reference 2018/19-8
preservation_date_begin 2019-05-01
preservation_temperature 4 °C, ambient
preservation_type Silica, frozen
project_aim Reference genome
sample_id 102.100.100/79638
sample_submission_date 2019-05-17
sample_submitter_email Daniel.Murphy@rbg.vic.gov.au
sample_submitter_name Daniel Murphy | Acacia Genome Consortium
scientific_name Acacia pycnantha
scientific_name_authorship Benth.
scientific_name_notes
sequencer NovaSeq 6000
silica_gel Yes
silica_gel_id Not applicable
silica_gel_pressed_sheet No
ticket BPAOPS-828
voucher_herbarium_catalog_number CANB 748486
voucher_herbarium_collector_id S.R. Donaldson
voucher_herbarium_event_date 2007-10-12
voucher_herbarium_record_number S.R. Donaldson 3550
voucher_herbarium_recorded_by S.R. Donaldson