JSON

GAP Hi-C, Reference genome, 79639,

Telopea speciosissima (Sm.) R.Br., Proteaceae, Jason Bragg

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
analysissoftwareversion GenerateFASTQ v1.1.0.64
bait_set_name
bait_set_reference Not applicable
base_url https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-hi-c/BPAOPS-972/
ccg_jira_ticket BPAOPS-972
data_generated True
data_type Pilot
dataset_id 102.100.100/83659
date_of_transfer 03/11/2020
date_of_transfer_to_archive 05/11/2020
description Illumina Short Read (Hi-C)
dna_extract Not applicable
dna_extract_pressed_sheet Not applicable
download https://data.bioplatforms.com/dataset/bpa-gap-illumina-shortread-83445
facility UNSW
family Proteaceae
file_count
flow_cell_id HW3MGBGXG
folder_name 20201103_GAP_UNSW_HW3MGBGXG (Hi-C NextSeq data)
genomic_material_associated_references https://phasegenomics.com/products/proximo/
genomic_material_preparation_date 2020-09-20
genomic_material_preparation_materials
genomic_material_preparation_process Phase Genomics Proximo Plant Hi-C v3.0
genomic_material_preparation_type Phase Genomics Proximo Plant Hi-C v3.0 (kit ID: KB30044102)
genomic_material_prepared_by Tonia Russell (Ramaciotti)
herbarium_code NSW
id_vetting_by Marlien van der Merwe | Herve Sauquet
id_vetting_date
library_construction_protocol Phase Genomics Plant Hi-C v3.0
library_id 83445
living_collections_catalog_number Not yet assigned
living_collections_event_date
living_collections_material_sample_rna Not applicable
living_collections_record_number Not yet assigned
living_collections_recorded_by Not yet assigned
nagoya_protocol_compliance Yes
nagoya_protocol_permit_number SL100569
preservation_date_begin
preservation_temperature Minus 80 (collected in liquid N)
preservation_type Freezing
project_aim Reference genome
run_format 2x150bp high output
sample_id 102.100.100/79639
sample_submission_date
sample_submitter_email Jason.Bragg@rbgsyd.nsw.gov.au
sample_submitter_name Jason Bragg
scientific_name Telopea speciosissima
scientific_name_authorship (Sm.) R.Br.
scientific_name_notes
sequencer NextSeq
silica_gel Not applicable
silica_gel_id Not applicable
silica_gel_pressed_sheet Not applicable
ticket BPAOPS-972
voucher_herbarium_catalog_number
voucher_herbarium_collector_id Jason Bragg
voucher_herbarium_event_date
voucher_herbarium_record_number NSW1024214
voucher_herbarium_recorded_by