GAP Hi-C, Reference genomes, 376315,

Xanthorrhoea johnsonii A.T.Lee, Asphodelacaeceae, Todd McLay | Ash Jones

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type illumina-hic
analysissoftwareversion
bait_set_name
bait_set_reference not applicable
base_url https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-hi-c/BPAOPS-1075/20210517_GAP_BRF_AH5TJYDRXY/
ccg_jira_ticket BPAOPS-1075
country Australia
data_generated True
data_type Main dataset (Phase 2 ref genomes)
dataset_id 83683
date_data_published 28/5/2021
date_of_transfer 20/05/2021
date_of_transfer_to_archive 27/5/2021
description Hi-C
dna_extract
dna_extract_pressed_sheet
download https://data.bioplatforms.com/dataset?q=ticket%3ABPAOPS-1075
facility BRF
family Asphodelacaeceae
flow_cell_id AH5TJYDRXY
folder_name 20210517_GAP_BRF_AH5TJYDRXY
genomic_material_associated_references In the protocol
genomic_material_preparation_date 2021-04-30
genomic_material_preparation_materials In the protocol
genomic_material_preparation_process Phase Genomics Proximo Hi-C (Plant) Kit KT3040 Protocol Version 4.0 (February 2021) https://info.phasegenomics.com/protocols
genomic_material_preparation_type HiC. Crosslinked leaf chromatin prep for proximity contacts. Enzyme DpnII
genomic_material_prepared_by Ashley Jones
herbarium_code CBG
id_vetting_by Todd McLay
id_vetting_date 2020-12-01
library_construction_protocol HiC
library_id 380532
living_collections_catalog_number CBG 8311086.1
living_collections_event_date 2020-12-01
living_collections_material_sample_rna not applicable
living_collections_record_number TM350
living_collections_recorded_by R. Hallett
location_id Australian National Botanic Gardens, Canberra, ACT, Section 15f
location_notes
nagoya_protocol_compliance Yes
nagoya_protocol_permit_number DNP Reference: 2020/21-1
population_group
preservation_date_begin 2020-12-01
preservation_temperature Leaf −80°C (2020-12-01) | Library -20°C (2021-04-30) | (no DNA)
preservation_type Freezing
project_aim Reference genomes
run_format 150 bp paired end
sample_id 102.100.100/376315
sample_submission_date 2021-05-13
sample_submitter_email todd.McLay@rbg.vic.gov.au | ashley.jones@anu.edu.au
sample_submitter_name Todd McLay | Ash Jones
scientific_name Xanthorrhoea johnsonii
scientific_name_authorship A.T.Lee
scientific_name_notes NA
sequencer NovaSeq 6000
silica_gel
silica_gel_id
silica_gel_pressed_sheet
species_complex
state_or_territory ACT
ticket BPAOPS-1075
voucher_herbarium_catalog_number 8900857
voucher_herbarium_collector_id R. Hallett
voucher_herbarium_event_date 1988-12-14
voucher_herbarium_record_number Hallett 22
voucher_herbarium_recorded_by R. Hallett