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GAP Hi-C, Refence genomes, 376316,

Phebalium stellatum I.Telford & J.J.Bruhl, Rutaceae, Rose Andrew | Ash Jones

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type illumina-hic
analysissoftwareversion
bait_set_name
bait_set_reference Not applicable
base_url https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-hi-c/BPAOPS-1075/20210517_GAP_BRF_AH5TJYDRXY/
ccg_jira_ticket BPAOPS-1075
country Australia
data_generated True
data_type Main dataset (Phase 2 ref genomes)
dataset_id 83683
date_data_published
date_of_transfer 20/05/2021
date_of_transfer_to_archive 27/5/2021
description Hi-C
dna_extract
dna_extract_pressed_sheet
download
facility BRF
family Rutaceae
flow_cell_id AH5TJYDRXY
folder_name 20210517_GAP_BRF_AH5TJYDRXY
genomic_material_associated_references In the protocol
genomic_material_preparation_date 2021-04-21
genomic_material_preparation_materials In the protocol
genomic_material_preparation_process Phase Genomics Proximo Hi-C (Plant) Kit KT3040 Protocol Version 4.0 (February 2021) https://info.phasegenomics.com/protocols
genomic_material_preparation_type HiC. Crosslinked leaf chromatin prep for proximity contacts. Enzyme DpnII
genomic_material_prepared_by Ashley Jones
herbarium_code NE
id_vetting_by Jeremy Bruhl
id_vetting_date 2019-03-09
library_construction_protocol HiC
library_id 380529
living_collections_catalog_number UNE20201105
living_collections_event_date 2020-11-05
living_collections_material_sample_rna Not applicable
living_collections_record_number SD354
living_collections_recorded_by S. Dema, J.J.Bruhl & I.Telford
location_id
location_notes Wild Cattle Creek State Forest, N of Cascade, 2.3 km along Measuring Hut Road from junction with Moses Rock Road
nagoya_protocol_compliance Yes
nagoya_protocol_permit_number SL100305
population_group
preservation_date_begin 2020-12-01
preservation_temperature Leaf −80°C (2020-12-01) | Library -20°C (2021-04-21) | (no DNA)
preservation_type Freezing
project_aim Refence genomes
run_format 150 bp paired end
sample_id 102.100.100/376316
sample_submission_date 2021-05-13
sample_submitter_email randre20@une.edu.au | ashley.jones@anu.edu.au
sample_submitter_name Rose Andrew | Ash Jones
scientific_name Phebalium stellatum
scientific_name_authorship I.Telford & J.J.Bruhl
scientific_name_notes NA
sequencer NovaSeq 6000
silica_gel No
silica_gel_id
silica_gel_pressed_sheet
species_complex
state_or_territory NSW
ticket BPAOPS-1075
voucher_herbarium_catalog_number 109286
voucher_herbarium_collector_id S.Dema
voucher_herbarium_event_date 2019-09-03
voucher_herbarium_record_number S.Dema 354
voucher_herbarium_recorded_by Sangay Dema | Jeremy Bruhl | Ian Telford | University of New England