GAP Hi-C, Reference genomes, 376318,

Wahlenbergia ceracea Lothian, Campanulaceae, Jemimah Hamilton | Ash Jones

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type illumina-hic
analysissoftwareversion
bait_set_name
bait_set_reference NA
base_url https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-hi-c/BPAOPS-1075/20210517_GAP_BRF_AH5TJYDRXY/
ccg_jira_ticket BPAOPS-1075
country Australia
data_generated True
data_type Main dataset (Phase 2 ref genomes)
dataset_id 83683
date_data_published 28/5/2021
date_of_transfer 20/05/2021
date_of_transfer_to_archive 27/5/2021
description Hi-C
dna_extract NA
dna_extract_pressed_sheet NA
download https://data.bioplatforms.com/dataset?q=ticket%3ABPAOPS-1075
facility BRF
family Campanulaceae
flow_cell_id AH5TJYDRXY
folder_name 20210517_GAP_BRF_AH5TJYDRXY
genomic_material_associated_references In the protocol
genomic_material_preparation_date 2020-12-18
genomic_material_preparation_materials In the protocol
genomic_material_preparation_process Phase Genomics Proximo Hi-C (Plant) Kit KT3040 Protocol Version 4.0 Beta (October 2020) https://info.phasegenomics.com/protocols
genomic_material_preparation_type HiC. Crosslinked leaf chromatin prep for proximity contacts. Enzyme DpnII
genomic_material_prepared_by Ashley Jones
herbarium_code CANB
id_vetting_by Adrienne Nicotra | The Australian National University
id_vetting_date 2021-04-12
library_construction_protocol HiC
library_id 380528
living_collections_catalog_number ANJH2019
living_collections_event_date 2020-10-10
living_collections_material_sample_rna NA
living_collections_record_number WC01
living_collections_recorded_by Adrienne Nicotra, Jemimah Hamilton and Kelli Gowland
location_id
location_notes
nagoya_protocol_compliance Yes
nagoya_protocol_permit_number SL100305
population_group
preservation_date_begin 2020-10-10
preservation_temperature Leaf −80°C (2020-10-10) | Library -20°C (2020-12-18) | (no DNA)
preservation_type Freezing
project_aim Reference genomes
run_format 150 bp paired end
sample_id 102.100.100/376318
sample_submission_date 2021-05-13
sample_submitter_email jemimah.hamilton@anu.edu.au | ashley.jones@anu.edu.au
sample_submitter_name Jemimah Hamilton | Ash Jones
scientific_name Wahlenbergia ceracea
scientific_name_authorship Lothian
scientific_name_notes NA
sequencer NovaSeq 6000
silica_gel no
silica_gel_id NA
silica_gel_pressed_sheet NA
species_complex
state_or_territory NSW
ticket BPAOPS-1075
voucher_herbarium_catalog_number CANB 924602
voucher_herbarium_collector_id Adrienne Nicotra | The Australian National University
voucher_herbarium_event_date 2021-04-12
voucher_herbarium_record_number CANB 924602.1
voucher_herbarium_recorded_by Adrienne Nicotra | The Australian National University