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GAP Genomics 10X, Refence genomes, 79639,

Telopea speciosissima (Sm.) R.Br., Proteaceae, Jason Bragg

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type illumina-10x
analysissoftwareversion Illumina RTA v3.4.4, Illumina bcl2fastq v2.20.0.422
bait_set_name
bait_set_reference Not applicable
base_url https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-10x/BPAOPS-878/
ccg_jira_ticket BPAOPS-878
country
data_generated True
data_type Pilot
dataset_id 83645
date_data_published
date_of_transfer 24/12/2019
date_of_transfer_to_archive 24/12/2019
description 10X Genomics
dna_extract Not applicable
dna_extract_pressed_sheet Not applicable
download https://data.bioplatforms.com/dataset/bpa-gap-genomics-10x-79639
facility AGRF
family Proteaceae
flow_cell_id HH77KDRXX
folder_name 20191219_GAP_AGRF_HH77KDRXX
genomic_material_associated_references
genomic_material_preparation_date 2019-07-19
genomic_material_preparation_materials
genomic_material_preparation_process Sorbitol Wash / CTAB extraction
genomic_material_preparation_type gDNA
genomic_material_prepared_by Patricia Lu-Irving | Samantha Yap
herbarium_code NSW
id_vetting_by Marlien van der Merwe | Herve Sauquet
id_vetting_date
library_construction_protocol 10X Chromium gDNA
library_id 81648
living_collections_catalog_number Not yet assigned
living_collections_event_date
living_collections_material_sample_rna Not applicable
living_collections_record_number Not yet assigned
living_collections_recorded_by Not yet assigned
location_id
location_notes Not applicable
nagoya_protocol_compliance Yes
nagoya_protocol_permit_number SL100569
population_group Not applicable
preservation_date_begin 2019-05-30
preservation_temperature −80°C (collected in liquid nitrogen)
preservation_type Freezing
project_aim Refence genomes
sample_id 102.100.100/79639
sample_submission_date
sample_submitter_email Jason.Bragg@rbgsyd.nsw.gov.au
sample_submitter_name Jason Bragg
scientific_name Telopea speciosissima
scientific_name_authorship (Sm.) R.Br.
scientific_name_notes
sequencer NovaSeq 6000
silica_gel
silica_gel_id
silica_gel_pressed_sheet Not applicable
species_complex
state_or_territory
ticket BPAOPS-878
voucher_herbarium_catalog_number
voucher_herbarium_collector_id Jason Bragg
voucher_herbarium_event_date
voucher_herbarium_record_number NSW1024214
voucher_herbarium_recorded_by