GAP Genomics 10X, Reference genomes, 79638,

Acacia pycnantha Benth., Fabaceae, Daniel Murphy | Acacia genome Consortium

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type illumina-10x
analysissoftwareversion Illumina RTA v3.4.4, Illumina bcl2fastq v2.20.0.422
bait_set_name
bait_set_reference not applicable
base_url https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-10x/BPAOPS-879/
ccg_jira_ticket BPAOPS-879
country
data_generated True
data_type Pilot
dataset_id 83644
date_data_published
date_of_transfer 24/12/2019
date_of_transfer_to_archive 24/10/2019
description 10X Genomics
dna_extract no
dna_extract_pressed_sheet no
download https://data.bioplatforms.com/dataset/bpa-gap-genomics-10x-79638
facility AGRF
family Fabaceae
flow_cell_id HFLC3DRXX
folder_name 20191219_GAP_AGRF_HFLC3DRXX
genomic_material_associated_references Acacia DNA extraction protocol on GAP website
genomic_material_preparation_date 2019-07-05
genomic_material_preparation_materials STE:CTAB/chloroform; isopropanol :NaAC precipitation
genomic_material_preparation_process STE:CTAB/chloroform; isopropanol :NaAC precipitation
genomic_material_preparation_type gDNA
genomic_material_prepared_by Todd McLay
herbarium_code CANB
id_vetting_by Dave Albrecht
id_vetting_date 2019-02-01
library_construction_protocol 10X Chromium gDNA
library_id 81647
living_collections_catalog_number CANB 748486
living_collections_event_date 2019-05-01
living_collections_material_sample_rna not applicable
living_collections_record_number TM304
living_collections_recorded_by Todd McLay
location_id
location_notes no
nagoya_protocol_compliance Yes
nagoya_protocol_permit_number DNP Reference 2018/19-8
population_group not applicable
preservation_date_begin 2019-07-05
preservation_temperature Ambient
preservation_type Silica, frozen
project_aim Reference genomes
sample_id 102.100.100/79638
sample_submission_date
sample_submitter_email Daniel.Murphy@rbg.vic.gov.au
sample_submitter_name Daniel Murphy | Acacia genome Consortium
scientific_name Acacia pycnantha
scientific_name_authorship Benth.
scientific_name_notes
sequencer NovaSeq 6000
silica_gel not applicable
silica_gel_id not applicable
silica_gel_pressed_sheet no
species_complex
state_or_territory
ticket BPAOPS-879
voucher_herbarium_catalog_number CANB 748486
voucher_herbarium_collector_id S.R. Donaldson
voucher_herbarium_event_date 2007-10-12
voucher_herbarium_record_number S.R. Donaldson 3550
voucher_herbarium_recorded_by S.R. Donaldson