AusARG Pacbio HiFi 102.100.100/350837

Pseudemoia entrecasteauxii, Pe2001_blood Australia NSW

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
Sequence Data Type pacbio-hifi
access_rights No_restrictions
ala_species_name
ala_specimen_url
analysis_software SMRT Link Analysis
analysis_software_version 10.1.0.119549
ancillary_notes
archive_ingestion_date 2021-07-19
associated_media
ausarg_project
barcode_id
base_url https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/pacbio-hifi/BPAOPS-1114/20210714_AusARG_AGRF_DA087270/350837_AusARG_AGRF_DA087270_HiFi_metadata/
birth_date
cell_postion A01
certainty 1.0
class Lepidosauria
collection_date 2021-01-17
collection_method lassoo
collector Oliver Griffith
collector_sample_id Pe2001
common_name Southern grass skink
contextual_data_submission_date
coord_uncertainty_metres 100.0
country Australia
data_context Reference genome
data_custodian Camilla Whittington
data_generated 2021-07-19
data_type PacBio-HiFi
dataset_id 102.100.100/351769
dataset_url
date_of_transfer 2021-07-19
death_date 2021-05-25
decimal_latitude_public -33.864278
decimal_longitude_public 150.044528
description HiFi
dna_treatment Megaruptor2 - 20kb setting
experimental_design NA
facility_project_code CAGRF21056800
facility_sample_id 350837.0
family Scincidae
fast5_compression
file_name
file_type bam
flowcell_id DA087270
flowcell_type SMRT Cell 8M
folder_name 20210714_AusARG_AGRF_DA087270
genotypic_sex M
genus Pseudemoia
habitat National_park
identified_by Oliver Griffith
insert_size_range 15-20kb
institution_name University_of_Sydney
latitude -33.864278
library_comments NA
library_construction_protocol Preparing HiFi SMRTbell® Libraries using SMRTbell Express Template Prep Kit 2.0
library_id 102.100.100/350837
library_index_id NA
library_index_id_dual
library_index_seq_dual
library_index_sequence NA
library_layout sheared
library_location AGRF
library_ng_ul 100.0
library_oligo_sequence NA
library_oligo_sequence_dual
library_pcr_cycles NA
library_pcr_reps NA
library_prep_date 2021-07-01
library_prepared_by Trent Peters
library_selection RANDOM
library_source GENOMIC
library_status
library_strategy WGS
library_type HiFi
lifestage adult
location_generalisation
location_text Kanangra-Boyd_NP
longitude 150.044528
material_conc_ng_ul 330.0
material_extracted_by Oliver_Griffith
material_extraction_date 2021-05-25
material_extraction_method HMW_extraction (circulomics)
material_extraction_type DNA
method_of_determination hemipene_and_and_testis_detection
model_base_caller
movie_length 30hrs
n_libraries_pooled
order Squamata
phenotypic_sex M
phylum Chordata
prior_genetics
sample_custodian Camilla_Whittington
sample_id 102.100.100/349813
sample_quality
sample_submission_date 2021-07-19
sequencing_facility AGRF
sequencing_kit_chemistry_version Sequel® II Sequencing Plate 2.0
sequencing_model PacBio Sequel II
sequencing_platform PACBIO_SMRT
source_population Kanangra-Boyd_NP
species entrecasteauxii
species_name Pseudemoia entrecasteauxii
specimen_id Pe2001
specimen_id_description University_of_Sydney_WhittingtonLab
state_or_region NSW
subspecies NA
taxon_id 223249.0
taxonomic_group lizard
ticket BPAOPS-1114
tissue_collection unknown
tissue_number Pe2001_blood
tissue_preservation none
tissue_type blood
type_status
voucher_number
voucher_or_tissue_number Pe2001_blood
wild_captive wild
work_order 13021.0