AusARG Pacbio HiFi 102.100.100/350822

Saiphos equalis, Se2033 Australia NSW

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
Sequence Data Type pacbio-hifi
access_rights No_restrictions
ala_species_name
ala_specimen_url
analysis_software SMRT Link Analysis
analysis_software_version 10.1.0.119549
ancillary_notes
archive_ingestion_date 2021-09-07
associated_media
ausarg_project
barcode_id
base_url https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/pacbio-hifi/BPAOPS-1131/2021093_AusARG_CAGRF21087913_DA095606/350822_AusARG_AGRF_DA095606_HiFi_metadata/
birth_date
cell_postion A01
certainty 1.0
class Lepidosauria
collection_date 2020-11-02
collection_method by_hand
collector Jacqueline_Herbert
collector_sample_id Se2033
common_name Three-toed_skink
contextual_data_submission_date
coord_uncertainty_metres 50.0
country Australia
data_context Reference genome
data_custodian Camilla Whittington
data_generated 2021-09-07
data_type PacBio-HiFi
dataset_id 102.100.100/351803
dataset_url rerun of the sample/library from BPAOPS-1107
date_of_transfer 2021-09-07
death_date 2021-05-24
decimal_latitude_public -33.886429
decimal_longitude_public 151.182844
description HiFi
dna_treatment SHEARING
experimental_design NA
facility_project_code CAGRF21087913
facility_sample_id 350822.0
family Scincidae
fast5_compression NA
file_name
file_type BAM
flowcell_id DA095606
flowcell_type SMRT Cell 8M
folder_name 2021093_AusARG_CAGRF21087913_DA095606
genotypic_sex M
genus Saiphos
habitat urban
identified_by Camilla_Whittington
insert_size_range 14885.0
institution_name University_of_Sydney
latitude -33.886429
library_comments Library sequenced
library_construction_protocol Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0
library_id 102.100.100/350822
library_index_id NA
library_index_id_dual NA
library_index_seq_dual NA
library_index_sequence NA
library_layout NA
library_location AGRF
library_ng_ul 77pm
library_oligo_sequence NA
library_oligo_sequence_dual NA
library_pcr_cycles NA
library_pcr_reps NA
library_prep_date 2021-06-22
library_prepared_by Trent Peters
library_selection size fractionation
library_source GENOMIC
library_status
library_strategy Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0
library_type WGS
lifestage adult
location_generalisation
location_text Sydney
longitude 151.182844
material_conc_ng_ul ~200
material_extracted_by Oliver_Griffith
material_extraction_date 2021-05-24
material_extraction_method HMW extraction kit
material_extraction_type DNA
method_of_determination hemipene_and_and_testis_detection
model_base_caller NA
movie_length 30HRS
n_libraries_pooled 1
order Squamata
phenotypic_sex M
phylum Chordata
prior_genetics
sample_custodian Camilla_Whittington
sample_id 102.100.100/349812
sample_quality
sample_submission_date 2021-09-07
sequencing_facility AGRF
sequencing_kit_chemistry_version Sequel II Sequencing Plate 2.0
sequencing_model PacBio Sequel II
sequencing_platform PACBIO_SMRT
source_population Sydney
species equalis
species_name Saiphos equalis
specimen_id Se2033
specimen_id_description University_of_Sydney_WhittingtonLab
state_or_region NSW
subspecies NA
taxon_id 172942.0
taxonomic_group lizard
ticket BPAOPS-1131
tissue_collection unknown
tissue_number Se2033_blood
tissue_preservation none
tissue_type blood
type_status
voucher_number
voucher_or_tissue_number Se2033
wild_captive wild
work_order 13034.0