AusARG Pacbio HiFi 102.100.100/350750

Lampropholis delicata, Ld2003 Australia NSW

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
Sequence Data Type pacbio-hifi
access_rights No restrictions
ala_species_name
ala_specimen_url
analysis_software SMRT Link Analysis
analysis_software_version 10.1.0.119549
ancillary_notes
archive_ingestion_date 2021-09-08
associated_media
ausarg_project
barcode_id
base_url https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/pacbio-hifi/BPAOPS-1133/2021093_AusARG_CAGRF21087911_DA095606/350750_AusARG_AGRF_DA095606_HiFi_metadata/
birth_date
cell_postion C01
certainty 1.0
class Reptilia
collection_date 2021-02-11
collection_method By hand
collector Camilla Whittington
collector_sample_id
common_name delicate skink
contextual_data_submission_date
coord_uncertainty_metres 20.0
country Australia
data_context Reference Genome
data_custodian Oliver Griffith
data_generated 2021-09-08
data_type PacBio-HiFi
dataset_id 102.100.100/351802
dataset_url rerun of the sample/library from BPAOPS-1091
date_of_transfer 2021-09-08
death_date
decimal_latitude_public -33.883385
decimal_longitude_public 151.178649
description HiFi
dna_treatment SHEARING
experimental_design NA
facility_project_code CAGRF21087911
facility_sample_id 350750.0
family Scincidae
fast5_compression NA
file_name
file_type BAM
flowcell_id DA095606
flowcell_type SMRT Cell 8M
folder_name 2021093_AusARG_CAGRF21087911_DA095606
genotypic_sex not determined
genus Lampropholis
habitat Urban park
identified_by Glenn Shea
insert_size_range 14211.0
institution_name University of Sydney
latitude -33.883385
library_comments Library sequenced
library_construction_protocol Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0
library_id 102.100.100/350750
library_index_id NA
library_index_id_dual NA
library_index_seq_dual NA
library_index_sequence NA
library_layout NA
library_location AGRF
library_ng_ul 77Pm
library_oligo_sequence NA
library_oligo_sequence_dual NA
library_pcr_cycles NA
library_pcr_reps NA
library_prep_date 2021-06-22
library_prepared_by Trent Peters
library_selection size fractionation
library_source GENOMIC
library_status
library_strategy Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0
library_type WGS
lifestage Adult
location_generalisation
location_text Camperdown
longitude 151.178649
material_conc_ng_ul 96.6
material_extracted_by Oliver Griffith
material_extraction_date 2021-02-23
material_extraction_method Circulomics Nanobind HMW DNA blood/tissue
material_extraction_type HMW DNA
method_of_determination inspected gonads
model_base_caller NA
movie_length 30HRS
n_libraries_pooled 1
order Squamata
phenotypic_sex Male
phylum Chordata
prior_genetics
sample_custodian Camilla Whittington
sample_id 102.100.100/349749
sample_quality
sample_submission_date 2021-09-08
sequencing_facility AGRF
sequencing_kit_chemistry_version Sequel II Sequencing Plate 2.0
sequencing_model PacBio Sequel II
sequencing_platform PACBIO_SMRT
source_population Sydney
species delicata
species_name Lampropholis delicata
specimen_id Ld2003
specimen_id_description Whittington Animal Lab number
state_or_region NSW
subspecies NA
taxon_id 316451.0
taxonomic_group
ticket BPAOPS-1133
tissue_collection Fresh Blood
tissue_number NA
tissue_preservation Fresh
tissue_type Blood
type_status
voucher_number
voucher_or_tissue_number Ld2003
wild_captive Wild
work_order 13032.0