JSON

AusARG Pacbio HiFi 102.100.100/350741

Physignathus lesueurii, Phleu_18_01_Blood Australia Qld

Data and Resources

Additional Info

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member
access_rights Public
ala_species_name
ala_specimen_url NA
analysis_software SMRT Link Analysis
analysis_software_version 9.0.0.92188
ancillary_notes NA
archive_ingestion_date 2020-12-02
associated_media NA
ausarg_project Reference Genome
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/pacbio-hifi/BPAOPS-999/AusARG_AGRF_PacBio_C20093932_DA043669/350741_AusARG_AGRF_PacBio_DA043669_HiFi_metadata/
birth_date
cell_postion A01
certainty Certain
class Reptilia
collection_date 2018-03-25
collection_method Hand
collector Nicola Kent
collector_sample_id Phleu_18_01_Blood
common_name Eastern Water Dragon
contextual_data_submission_date
coord_uncertainty_metres Exact
country Australia
data_custodian Celine Frere
data_generated 2020-12-02
data_type PacBio-HiFi
dataset_id 102.100.100/351731
dataset_url
date_of_transfer 2020-12-01
death_date 2018-04-05
description HiFi
dna_treatment Megaruptor2 - 20kb setting
experimental_design HiFi
facility_sample_id Phleu_18_01a
family Agamidae
file_name
flowcell_id DA043673
flowcell_type SMRT Cell 8M
folder_name AusARG_AGRF_PacBio_C20093932_DA043669
genotypic_sex None
genus Physignathus
habitat Built
identified_by Arthur Georges
insert_size_range 17443.0
institution_name University of Canberra
latitude -27.462856
library_comments NA
library_construction_protocol Preparing HiFi SMRTbell® Libraries using SMRTbell Express Template Prep Kit 2.0
library_id 102.100.100/350741
library_index_id NA
library_index_sequence NA
library_location AGRF
library_ng_ul 70pM
library_oligo_sequence NA
library_pcr_cycles NA
library_pcr_reps NA
library_prep_date 2020-10-21
library_prepared_by Trent Peters
library_status Data available
library_type HIFI
lifestage Adult
location_generalisation
location_text Roma Street Parkland
longitude 153.011834
material_conc_ng_ul 85.0
material_extracted_by Dan Powell
material_extraction_date 2020-09-18
material_extraction_method Spooling
material_extraction_type DNA
method_of_determination Dissection
movie_length 30hrs
n_libraries_pooled NA
order Squamata
phenotypic_sex Male
phylum Chordata
prior_genetics NA
sample_custodian Arthur Georges
sample_id 102.100.100/349741
sample_quality Good
sample_submission_date 2020-12-01
sequencing_facility AGRF
sequencing_platform PacBio Sequel II
source_population Roma Street, Brisbane
species lesueurii
species_name Physignathus lesueurii
specimen_id Phleu_18_02
specimen_id_description ANU
state_or_region Qld
subspecies NA
taxon_id 103694.0
taxonomic_group NA
ticket BPAOPS-999
tissue_collection UC<Aus>
tissue_number Phleu_18_01_Blood03
tissue_preservation Frozen
tissue_type Blood
type_status NA
voucher_number
voucher_or_tissue_number Phleu_18_01_Blood
wild_captive Wild
work_order 13007.0